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2549 commits

Author SHA1 Message Date
Martin Artnik
4f4ab05740 Fix project search in quick start controller [SCI-5915] 2021-10-01 12:20:51 +02:00
Martin Artnik
1d20258a2e Fix typo [SCI-5924] 2021-10-01 12:20:51 +02:00
Oleksii Kriuchykhin
d21dd191a6 Confirm the invitation when user is invited and lands in with SSO [SCI-6055] 2021-09-30 17:06:45 +02:00
artoscinote
f68d724202
Rework experiment permissions [SCI-6054] (#3538) 
* Rework experiment permissions [SCI-6054]
 2021-09-30 11:32:11 +02:00
aignatov-bio
a93f2889b7 Fix 2fa redirecting [SCI-6103] 2021-09-28 12:34:41 +02:00
aignatov-bio
c248e87adb
Add permissions checks for results controllers [SCI-6071] (#3555) 
* Add permission tests for results controller [SCI-6071]

* Update results controllers with new permissions [SCI-6071]

* Small fixes to results controllers [SCI-6071]

* Update result permission helpers [SCI-6071]
 2021-09-24 13:11:41 +02:00
Alex Kriuchykhin
313eaf7276
Merge pull request #3539 from aignatov-bio/ai-sci-6050-fix-sidebar-navigation-for-archived-task 
Fix sidebar navigation for archived task [SCI-6050]
 2021-09-24 11:47:59 +02:00
Martin Artnik
49b9ee37cc Merge branch 'develop' into features/bmt-search 2021-09-24 11:01:27 +02:00
Oleksii Kriuchykhin
607b7f76cf Update/implement permission checks in the my_modules_controller and my_modules_status_flow_controller [SCI-6061][SCI-6063] 2021-09-24 10:23:28 +02:00
Alex Kriuchykhin
51e7f7668a
Merge pull request #3556 from okriuchykhin/ok_SCI_6062 
Update/implement permission checks in the _my_modules_tags_controller [SCI-6062]
 2021-09-23 17:23:22 +02:00
artoscinote
e57f5f8e26
Merge pull request #3551 from aignatov-bio/ai-sci-6065-update-my-module-comments-controller-permission 
Update permissions for my_module_comments controller [SCI-6065]
 2021-09-23 11:47:13 +02:00
aignatov-bio
6206f8a6e9 Update permissions for my_module_comments controller [SCI-6065] 2021-09-22 12:11:36 +02:00
Oleksii Kriuchykhin
5fb163c09a Update/implement permission checks in the _my_modules_tags_ controller [SCI-6062] 2021-09-21 16:21:55 +02:00
Miha Mencin
519dbe8fe9
Merge pull request #3554 from biosistemika/master 
Sept. hotfix
 2021-09-21 10:19:48 +02:00
aignatov-bio
78098f2d8c Add permission check for results download 2021-09-20 14:33:42 +02:00
aignatov-bio
250a018a4c Add permissions tests for my_module_repositories and my_module_repository_snapshots [SCI-6064] 2021-09-20 12:19:28 +02:00
Alex Kriuchykhin
0db9bf46ff
Merge pull request #3528 from okriuchykhin/ok_SCI_6036 
Prevent creation of duplicated repository cells [SCI-6036]
 2021-09-17 16:37:48 +02:00
Martin Artnik
e8f57e9e99 Reworked MyModule permissions [SCI-6056] 2021-09-14 11:08:35 +02:00
aignatov-bio
6a1223c498 Fix sidebar navigation for archived task [SCI-6050] 2021-09-10 12:05:40 +02:00
aignatov-bio
3036a38bfd
Fix rspec tests [SCI-6044] (#3537) 2021-09-09 15:41:42 +02:00
Oleksii Kriuchykhin
e8e1ee3011 Prevent creation of duplicated repository cells [SCI-6036] 2021-09-09 14:24:35 +02:00
Alex Kriuchykhin
a93ca08db3
Merge pull request #3532 from okriuchykhin/ok_SCI_6010 
Fix BMT base URL path in requests [SCI-6010]
 2021-09-07 16:30:21 +02:00
Oleksii Kriuchykhin
7041cc19af Fix BMT base URL path in requests [SCI-6010] 2021-09-07 16:28:14 +02:00
Martin Artnik
8c864c65e5 Fix syntax error 2021-09-07 13:27:32 +02:00
aignatov-bio
6484dfe630 Change printing status modal logic [SCI-6034] 2021-09-07 12:28:11 +02:00
Oleksii Kriuchykhin
3cab5751e7 Add rake task for creation and syncing structure of BMT inventory [SCI-6010] 2021-09-07 12:17:09 +02:00
Martin Artnik
975a8910a8 Updated project permission helpers [SCI-6041] 2021-09-07 11:27:52 +02:00
Martin Artnik
ade1385392 Merge branch 'develop' into features/bmt-search 2021-09-06 10:51:04 +02:00
Martin Artnik
7e6ca3be8a Merge branch 'develop' into features/new_permissions 2021-09-06 10:33:32 +02:00
Miha Mencin
50d33896e3
Merge pull request #3480 from artoscinote/ma_SCI_5963 
Downcase all user emails, downcase when finding user [SCI-5963]
 2021-08-30 13:00:12 +02:00
Martin Artnik
896f0ce1e3 Implemented applying BMT filters [SCI-5980] 2021-08-30 10:49:15 +02:00
aignatov-bio
b269f3f612 Add saved filters backend [SCI-5977] (#3509) 
* Add saved filters backend [SCI-5977]

* Rework filter saving [SCI-5977]

Co-authored-by: Martin Artnik <martin@scinote.net>
 2021-08-30 10:49:15 +02:00
Oleksii Kriuchykhin
0b74f34de7 Add external IDs to repositories [SCI-5990] 2021-08-30 10:49:14 +02:00
artoscinote
afc74b6b8f
Merge pull request #3500 from artoscinote/ma_SCI_6014 
Added edit activities on asset deletion [SCI-6014]
 2021-08-30 10:00:58 +02:00
Martin Artnik
56fa07aa21 Moved max item name length to constant [SCI-6025] 2021-08-24 10:19:30 +02:00
Martin Artnik
289095ecbc Amended label template, truncate item name before print [SCI_6025] 2021-08-24 09:52:29 +02:00
Martin Artnik
b46df537d5 Added edit activities on asset deletion [SCI-6014] 2021-08-20 14:45:33 +02:00
Alex Kriuchykhin
5fa3fa4601
Merge pull request #3491 from okriuchykhin/ok_SCI_5983 
Add timestamps to API serializers, allow inclusion of comments [SCI-5983]
 2021-08-19 10:43:02 +02:00
artoscinote
80dfb04976
Merge pull request #3485 from okriuchykhin/ok_SCI_6002 
Fix permission checks in reports controller [SCI-6002]
 2021-08-18 15:27:49 +02:00
Oleksii Kriuchykhin
33d37d048e Add timestamps to API serializers, allow inclusion of comments [SCI-5983] 2021-08-18 10:00:01 +02:00
Martin Artnik
5cc966e11e Remove delete molecule activities [SCI-5999] 2021-08-16 13:58:54 +02:00
Oleksii Kriuchykhin
2daacdf62c Fix permission checks in reports controller [SCI-6002] 2021-08-13 16:32:02 +02:00
Martin Artnik
56576960b0 Rework molecule registration activities [SCI-5999] 2021-08-13 15:15:45 +02:00
artoscinote
12bb44147c
Merge pull request #3482 from artoscinote/ma_SCI_5984 
Optimize how printing jobs and statuses work [SCI-5984]
 2021-08-13 09:25:42 +02:00
Martin Artnik
1d3e0db904 Optimize how printing jobs and statuses work [SCI-5984] 2021-08-12 16:57:25 +02:00
Martin Artnik
1db06b46f7 Fixed for assets that belong to protocol step [SCI-5996] 2021-08-12 13:45:38 +02:00
Martin Artnik
5d5f406e9a Downcase all user emails, downcase when finding user [SCI-5963] 2021-08-11 13:18:58 +02:00
Martin Artnik
861be4bb35 Fix issues with BioEddie integration [SCI-5982] 2021-08-11 09:50:00 +02:00
Martin Artnik
024f9117e6 fix failing specs 2021-08-03 14:16:22 +02:00
Martin Artnik
57d5e6c2a7 Merge branch 'develop' into features/barcodes 2021-08-03 13:36:36 +02:00
artoscinote
f839cb5256
Merge pull request #3464 from biosistemika/features/bioeddie-integration 
Features/bioeddie integration
 2021-08-03 13:32:53 +02:00
artoscinote
c41247a5fd
Merge pull request #3439 from artoscinote/ma_SCI_5879 
Implement Save & Register molecule [SCI-5879]
 2021-08-03 12:15:46 +02:00
Martin Artnik
a82af505eb Merge branch 'develop' into features/webhooks 2021-08-02 16:22:52 +02:00
Martin Artnik
a19f109e65 Add printer description [SCI-5942] 2021-08-02 15:50:26 +02:00
Martin Artnik
ae174b276a Code review fixes and error handling improvements [SCI-5942] 2021-08-02 15:42:53 +02:00
Martin Artnik
123e415a4f Print status backend + FE integration [SCI-5942] 2021-08-02 15:42:53 +02:00
aignatov-bio
43571b5692
Print labels changes [SCI-5943] (#3461) 2021-08-02 15:38:37 +02:00
Martin Artnik
0f417f9730 Merge branch 'develop' into features/barcodes 2021-07-29 13:32:17 +02:00
artoscinote
3649e2fbe0
Merge pull request #3457 from artoscinote/ma_SCI_5903 
Added print job queue system, job status endpoint [SCI-5903]
 2021-07-29 13:06:34 +02:00
aignatov-bio
02408ae885
Add printing status modal [SCI-5910] (#3454) 2021-07-29 12:24:46 +02:00
Martin Artnik
67f4e81a3a Merge branch 'develop' into features/new_permissions 2021-07-28 15:16:47 +02:00
aignatov-bio
a54f36a486
Add empty state for barcode printers [SCI-5935] (#3455) 2021-07-28 11:12:46 +02:00
Martin Artnik
e57132dbd0 Added print job queue system, job status endpoint [SCI-5903] 2021-07-27 15:26:18 +02:00
artoscinote
46a9388d8d
Merge pull request #3451 from artoscinote/ma_SCI_5911 
Implemented printer management [SCI-5911]
 2021-07-27 13:19:13 +02:00
aignatov-bio
d373c174ee
Add print label button to repository toolbar (#3453) 2021-07-27 12:34:13 +02:00
Martin Artnik
110ddd872e Added placeholder FLUICS printer setup 2021-07-23 14:56:21 +02:00
Martin Artnik
b32b207f3d Added FLUICS API client [SCI-5939] 2021-07-23 13:52:28 +02:00
Oleksii Kriuchykhin
c26dcf4b23 Replace empty? with blank? [SCI-5579] 2021-07-23 11:56:28 +02:00
Martin Artnik
04b94d504d Moved activity logging to controller [SCI-5879] 2021-07-22 09:52:04 +02:00
aignatov-bio
d4f974ac64
Add inline editing for folder name [SCI-5896] (#3430) 2021-07-21 21:33:13 +02:00
aignatov-bio
be777a8919
Add barcodes to repository item card [SCI-5883][SCI-5884] (#3447) 
* Add barcodes to repository item card [SCI-5883][SCI-5884]

* Fix markup [SCI-5883]
 2021-07-21 21:32:42 +02:00
aignatov-bio
f2e5dc8b2f
Add printers to addon page [SCI-5904][SCI-5931] (#3450) 
* Add printers to addon page [SCI-5904]

* Fix markup
 2021-07-21 13:48:38 +02:00
Alex Kriuchykhin
dfa2a7775d
Merge pull request #3422 from okriuchykhin/ok_SCI_5847 
Fix repository cell joining and preloading [SCI-5847]
 2021-07-21 13:18:21 +02:00
Oleksii Kriuchykhin
b69ed98e13 Add biomolecular toolkit license endpoint [SCI-5844] 2021-07-21 13:16:27 +02:00
Alex Kriuchykhin
e881bf32ae
Merge pull request #3414 from okriuchykhin/ok_SCI_5843 
Add biomolecular toolkit API proxying endpoint [SCI-5843]
 2021-07-21 13:14:04 +02:00
artoscinote
888131a465
Merge branch 'features/bioeddie-integration' into ma_SCI_5879 2021-07-20 09:48:13 +02:00
aignatov-bio
53456988ba
Add bioEddie activities and user licenses [SCI-5845][SCI-5842] (#3411) 
* Add bio eddie licens to users [SCI-5845]

* Add activities for BioEddie [SCI-5842]
 2021-07-19 21:33:28 +02:00
Oleksii Kriuchykhin
1c8b32dffc Add biomolecular toolkit API proxying endpoint [SCI-5843] 2021-07-16 15:58:40 +02:00
Martin Artnik
96a5b97bdb Implement Save & Register molecule [SCI-5879] 2021-07-15 12:37:04 +02:00
Martin Artnik
ff0ac9f497 Fix free invite users modal [SCI-5900] 2021-07-13 15:51:05 +02:00
Martin Artnik
3cb395db15 Use where_attributes like in team search [SCI-5099] 2021-07-09 10:49:11 +02:00
Martin Artnik
fb040bee07 Fix styling, functionality issues with invite users modal [SCI-5099] 2021-07-08 16:10:20 +02:00
Oleksii Kriuchykhin
549fc8e5a0 Fix repository cell joining and preloading [SCI-5847] 2021-07-07 17:43:51 +02:00
Oleksii Kriuchykhin
d1208bad0b Merge branch 'develop' into features/new_permissions 2021-07-07 13:44:36 +02:00
artoscinote
52946d18e0
Merge pull request #3416 from artoscinote/ma_SCI_5099 
Rework the team invite modal functionality on members page [SCI-5099]
 2021-07-05 12:41:04 +02:00
Martin Artnik
5f528fcdb5 Rework the team invite modal functionality on members page [SCI-5099] 2021-07-05 12:39:54 +02:00
aignatov-bio
bef57eacac Add missed activtiy for tag removing [SCI-5568] 2021-06-30 13:34:02 +02:00
artoscinote
9804e1bd28
Merge pull request #3400 from artoscinote/ma_SCI_5701 
Reworked task view sidebar [SCI-5701]
 2021-06-29 11:26:56 +02:00
zmagoD
9c812e84bd setup logic to group assign all team members and handle the unassignments logic 2021-06-27 13:22:19 +02:00
aignatov-bio
786e74e4de
Add BioEddie integration [SCI-5654][SCI-5657][SCI-5658][SCI-5670] (#3391) 
* Add backend for bioeddie [SCI-5654]

* Add modal for bioeddie [SCI-5654]

* Add bio eddie editor to steps and results [SCI-5654]

* Fix markup and code styling
 2021-06-23 19:48:44 +02:00
Martin Artnik
c6c5f75262 Remove unncessary newline 2021-06-22 14:53:03 +02:00
zmagoD
ad10befcc4 add new manage access permission to PET levels 2021-06-19 17:17:57 +02:00
Martin Artnik
b6588c2334 Reworked task view sidebar [SCI-5701] 2021-06-18 16:52:19 +02:00
Oleksii Kriuchykhin
bb458abec6 Remove old reports code [SCI-5650] 2021-06-18 10:40:00 +02:00
Oleksii Kriuchykhin
1e3197875c Fix repositories selection in report wizard and deleted repositories handling [SCI-5831] 2021-06-17 16:23:27 +02:00
Martin Artnik
47071e23a1 Added specs for webhooks 2021-06-17 14:54:30 +02:00
Alex Kriuchykhin
b73972dbbf
Merge pull request #3389 from artoscinote/ma_SCI_5819 
Set scinote template if missing when generating reports [SCI-5819]
 2021-06-16 12:27:02 +02:00
aignatov-bio
7313b5fa16
Add archived and deleted repositories to reports [SCI-5781] (#3387) 
* Add archived and deleted repositories to reports [SCI-5781]

* Small markup fix [SCI-5781]
 2021-06-16 10:56:08 +02:00
Martin Artnik
2427086372 Set scinote template if missing when generating reports [SCI-5819] 2021-06-15 12:54:48 +02:00
Miha Mencin
60c309e1cd
Merge pull request #3375 from artoscinote/ma_SCI_5787 
Fix changing report project, fix typo [SCI-5787]
 2021-06-09 13:43:23 +02:00
aignatov-bio
afe2a19c88
Add webhooks management [SCI-5767] (#3376) 
* Add webhooks managment [SCI-5767]

* Markup fixes [SCI-5676]
 2021-06-09 12:53:11 +02:00
Martin Artnik
6d98b7eb2b Fix changing report project, fix typo [SCI-5787] 2021-06-08 15:07:00 +02:00
Oleksii Kriuchykhin
86fcda3c09 Fix date formatting for the API [SCI-5785] 2021-06-07 10:34:58 +02:00
zmagoD
784e43e328 create user_assignments for all child objects when the user is attached to the project 2021-06-06 09:54:47 +02:00
aignatov-bio
9559ed88aa
Add webhooks index page [SCI-5766] (#3366) 2021-06-03 14:00:43 +02:00
zmagoD
3d79dd32ad update endpoint type 2021-05-31 21:48:18 +02:00
aignatov-bio
3c7592657c Add activity filters [SCI-5765] 2021-05-31 13:39:10 +02:00
zmagoD
debff7bc85 fix code style 2021-05-29 19:25:46 +02:00
zmagoD
28cb7ee81d add user roles enpoint and update scenarios 2021-05-29 15:28:10 +02:00
Alex Kriuchykhin
967ec1fdbf
Merge pull request #3349 from aignatov-bio/ai-sci-5758-small-report-wizard-fixes 
Small report wizard fixes [SCI-5758]
 2021-05-27 14:28:21 +02:00
Oleksii Kriuchykhin
7a5c7e0526 Fix reports docx job arguments [SCI-5763] 2021-05-26 14:34:58 +02:00
aignatov-bio
f586865696 Small report wizard fixes [SCI-5758] 2021-05-25 13:14:57 +02:00
zmagoD
7e6789200a fix new API endpoints and add test cases 2021-05-23 17:31:02 +02:00
zmagoD
300c1521fd add new API endpoints and fix/update ExperimentMember and MyModuleMember modules 2021-05-22 18:36:30 +02:00
zmagoD
be94cb09c2 fix code style 2021-05-22 14:41:56 +02:00
Oleksii Kriuchykhin
64ce35c8da Refactor DOCX report generator [SCI-5735] 2021-05-21 16:40:38 +02:00
Oleksii Kriuchykhin
29c83ffbb1 Merge branch 'develop' into features/new-reports 2021-05-21 11:04:17 +02:00
Miha Mencin
6142c2d89d
Merge pull request #3336 from aignatov-bio/ai-sci-5740-default-template-selection 
Add default template selection [SCI-5740]
 2021-05-20 15:11:33 +02:00
Oleksii Kriuchykhin
7bfde7dc1e Render report element children container only if children are present [SCI-5739] 2021-05-20 14:16:39 +02:00
aignatov-bio
1b56190116 Add default template selection [SCI-5740] 2021-05-20 13:18:57 +02:00
aignatov-bio
c961b493fc
Small fixes in reports templates [SCI-5723] (#3327) 
* Small fixes in reports templates [SCI-5723]

* Update template name validation [SCI-5723]
 2021-05-18 15:19:51 +02:00
aignatov-bio
e8b115ca7a Change results sorting [SCI-5727] 2021-05-17 15:17:32 +02:00
Miha Mencin
d952edd389
Merge pull request #3316 from okriuchykhin/ok_SCI_5702 
Add generation error states to reports [SCI-5702]
 2021-05-17 10:16:06 +02:00
zmagoD
c23c01c01c remove user projects enpoints, fix the role name display 2021-05-16 12:03:16 +02:00
Oleksii Kriuchykhin
a175e83a16 Add generation error states to reports [SCI-5702] 2021-05-11 14:52:02 +02:00
aignatov-bio
44a17dc014 Fix ordering tasks in report and wizard [SCI-5706] 2021-05-11 09:40:51 +02:00
zmagoD
5ee38966a0 Merge branch 'features/new_permissions' of https://github.com/biosistemika/scinote-web into new_perimssions-managing-project-ui 2021-05-11 08:36:39 +02:00
Miha Mencin
56a6c0825d
Merge pull request #3296 from okriuchykhin/ok_SCI_5699 
Improve handling of selected inventories in reports [SCI-5699]
 2021-05-10 10:48:09 +02:00
Miha Mencin
b4b7783cd3
Merge pull request #3301 from okriuchykhin/ok_SCI_5691 
Hide empty projects in reports editor [SCI-5691]
 2021-05-10 10:47:23 +02:00
Miha Mencin
4886a78be9
Merge pull request #3297 from okriuchykhin/ok_SCI_5694 
Add flash messages for report generation [SCI-5694]
 2021-05-10 10:46:49 +02:00
zmagoD
d145dd6d36 add my module assigments modals 2021-05-09 16:59:10 +02:00
zmagoD
ac91d9c2c4 add assign user permission to experiment level 2021-05-08 18:06:07 +02:00
Oleksii Kriuchykhin
b056eb797f Hide empty projects in reports editor [SCI-5691] 2021-05-07 18:28:13 +02:00
Oleksii Kriuchykhin
e4d852b9f5 Fix report PDF generation job params [SCI-5708] 2021-05-07 17:00:34 +02:00
Oleksii Kriuchykhin
06109889c5 Add flash messages for report generation [SCI-5694] 2021-05-07 16:23:35 +02:00
Oleksii Kriuchykhin
62b919cd8f Improve handling of selected inventories in reports [SCI-5699] 2021-05-07 14:55:01 +02:00
Alex Kriuchykhin
7bc6abd9bb
Merge pull request #3290 from okriuchykhin/ok_SCI_5614 
Improve report saving performance and error handling [SCI-5614]
 2021-05-07 11:51:57 +02:00
Alex Kriuchykhin
eb773d94c5
Merge pull request #3294 from okriuchykhin/ok_SCI_5619 
Add default settings to existing reports [SCI-5619][SCI-5672]
 2021-05-07 11:38:41 +02:00
Alex Kriuchykhin
7a256838c1
Merge pull request #3292 from aignatov-bio/ai-sci-5638-add-missing-activities-for-new-reports 
Add new activities to reports [SCI-5638]
 2021-05-07 11:26:21 +02:00
Oleksii Kriuchykhin
b67f2a21f5 Add default settings to existing reports [SCI-5619][SCI-5672] 2021-05-06 17:33:58 +02:00
aignatov-bio
2fc5bd2521
Fix report processing state after create and update [SCI-5678] (#3276) 2021-05-06 14:22:02 +02:00
aignatov-bio
bb5f985630 Add new activities to reports [SCI-5638] 2021-05-06 14:03:45 +02:00
Oleksii Kriuchykhin
c0ef2eef3c Improve report saving performance and error handling [SCI-5614] 2021-05-06 10:53:40 +02:00
miha
36788db816 SCI-5698 Make the decision to redirect to 2fa more readable 2021-05-06 08:14:39 +02:00
miha
f23ff73610 SCI-5693 skip 2fa if bypass is set 2021-05-05 17:29:21 +02:00
miha
136f0cd17f SCI-5693 refactor of 2fa procedure 2021-05-04 20:51:34 +02:00
Oleksii Kriuchykhin
a307a16033 Fix handsontable assets inclusion in report templates [SCI-5692] 2021-05-04 16:05:19 +02:00
zmagoD
47cb1b31dc fix code style 2021-05-02 11:36:10 +02:00
zmagoD
c1d98f421d update scenarios and UI logic to handle project page reload after modal close 2021-05-02 11:22:59 +02:00
zmagoD
11e5662c47 add fe logic for disable/enable fields 2021-04-30 13:26:06 +02:00
aignatov-bio
86854b015d Add third template to reports [SCI-5618] 2021-04-29 15:21:58 +02:00
zmagoD
8a74546cdf fix the logic for addin/editing new project members 2021-04-28 18:02:18 +02:00
aignatov-bio
7c75f170d0
Add repositories settings to report wizard [SCI-5648] (#3269) 
* Add repositories settings to report wizard [SCI-5648]

* Move repositories from report settings to content [SCI-5648]
 2021-04-28 09:54:00 +02:00
zmagoD
c136d953d0 create form object for role assigment, create helper object for project member, added new user_projects modal 2021-04-24 18:43:28 +02:00
Oleksii Kriuchykhin
a67cc619ec Add additional custom fields for reports [SCI-5609] 2021-04-20 13:57:09 +02:00
aignatov-bio
d18a54c874
Update create and update action for reports controller [SCI-5641] (#3260) 
Update create and update action [SCI-5641]
 2021-04-20 13:35:40 +02:00
zmagoD
04ef7a4478 add show and edit permissions modal 2021-04-18 17:19:16 +02:00
zmagoD
3333241c9a add CTA for project members modal SCI-5645 2021-04-18 12:23:29 +02:00
Miha Mencin
f95e9402bd
Merge pull request #3258 from okriuchykhin/ok_SCI_5613 
Fix save report PDF to Inventory [SCI-5613]
 2021-04-15 09:30:04 +02:00
Alex Kriuchykhin
80827ce761
Merge pull request #3257 from biosistemika/SCI-5623-add-external-id-to-user 
SCI-5623 add external id to user
 2021-04-14 16:15:43 +02:00
Oleksii Kriuchykhin
f13f3691b1 Fix blob permissions check to support multiple attachments [SCI-5613] 2021-04-14 16:07:01 +02:00
Oleksii Kriuchykhin
fe8f006f6e Fix save report PDF to Inventory [SCI-5613] 2021-04-14 16:06:59 +02:00
Oleksii Kriuchykhin
0a9a656313 Add flash message and notification for generated reports [SCI-5552] 2021-04-14 15:45:51 +02:00
Oleksii Kriuchykhin
a2a0aabb62 Implement pooling for Report document creation status [SCI-5557] 2021-04-14 15:16:08 +02:00
Oleksii Kriuchykhin
df8354bde3 Move the docx creation to the Delayed job [SCI-5560] 2021-04-14 12:39:36 +02:00
aignatov-bio
bccd474cc6 Add edit mode for report [SCI-5620] 2021-04-14 11:51:03 +02:00
miha
e610683d5c [SCI-5623] added external_id setting to user 2021-04-14 09:44:09 +02:00
Alex Kriuchykhin
1df86c36d9
Merge pull request #3254 from okriuchykhin/ok_SCI_5637 
Implement PDF report generation in delayed job [SCI-5637]
 2021-04-13 16:37:16 +02:00
Oleksii Kriuchykhin
f864f551d5 Implement PDF report generation in delayed job [SCI-5637] 2021-04-12 13:04:02 +02:00
miha
56ebc3dc07 [SCI-5635] add a migration to fix broken steps, fix the api so it sets last_modified_by_id, minor step model refactor 
migration fix

remove the conditoin for set_last_modified_by callback

set the last_modified_by_id in before_save callback (in case it is not set yet)

remove trailing spaces

Set last modified in protocl import service
 2021-04-12 09:59:00 +02:00
Oleksii Kriuchykhin
67302da968 Add settings to reports [SCI-5612] 2021-04-08 17:40:16 +02:00
aignatov-bio
e6edbf55f3 Add report wizard step 2 [SCI-5572] 2021-04-08 12:00:08 +02:00
Alex Kriuchykhin
aa21d7e415
Merge pull request #3247 from okriuchykhin/ok_SCI_5591 
Add dynamic form elements in report wizard step 1 [SCI-5591]
 2021-04-07 12:05:10 +02:00
aignatov-bio
a46b9cb8ea Add document preview to reports [SCI-5559] 2021-04-07 11:15:22 +02:00
Oleksii Kriuchykhin
a9ac8452f2 Add dynamic form elements in report wizard step 1 [SCI-5591] 2021-04-06 13:56:24 +02:00
miha
961fa9ab4e [SCI-5631] Add ordering to index endpoint so pagination works, limit maximum page size for kaminari 2021-04-06 09:59:24 +02:00
aignatov-bio
82be23db81 Add project and template selector [SCI-5570] 2021-03-31 15:32:03 +02:00
Alex Kriuchykhin
c9688a58f7
Merge pull request #3241 from aignatov-bio/ai-sci-5571-add-template-partial-to-report 
Add template partials to reports [SCI-5571]
 2021-03-31 11:36:56 +02:00
aignatov-bio
d04858d26e Fix markup [SCI-5571] 2021-03-30 23:47:34 +02:00
aignatov-bio
ecca155fab Added layout for footer and header [SCI-5571] 2021-03-30 23:43:34 +02:00
aignatov-bio
ad8e404bca Add template partials to reports [SCI-5571] 2021-03-30 13:40:36 +02:00
aignatov-bio
1c93131ff1 Fix folders breadcrumbs [SCI-5597] 2021-03-26 11:58:18 +01:00
aignatov-bio
b5cb46908c
Merge pull request #3225 from aignatov-bio/ai-sci-5563-add-reload-action-to-inline-asset 
Add reload action for assets [SCI-5563]
 2021-03-25 15:40:36 +01:00
Oleksii Kriuchykhin
943c01cada Remove simple_token_authentication [SCI-5595] 2021-03-25 14:55:22 +01:00
aignatov-bio
0920d0a5cd Add reports wizzard layout [SCI-5569] 2021-03-25 13:21:54 +01:00
aignatov-bio
7c573a1ee9 Add reload action for assets [SCI-5563] 2021-03-22 13:02:13 +01:00
Oleksii Kriuchykhin
d315b1327b Implement missing missing user smart annotation notifications [SCI-5575] 2021-03-19 17:11:19 +01:00
Oleksii Kriuchykhin
413187e6da Fix filtering on current tasks widget [SCI-5555] 2021-03-12 13:33:37 +01:00
Urban Rotnik
8bacc74c17
Merge pull request #3187 from urbanrotnik/ur-sci-5439 
Fix report completed_on time and username [SCI-5439]
 2021-03-09 13:27:24 +01:00
Urban Rotnik
e1db291729
Merge pull request #3200 from urbanrotnik/ur-sci-5525 
Add breadcrumbs on Experiments and Tasks pages [SCI-5525]
 2021-03-08 14:13:44 +01:00
Urban Rotnik
a4112984ea fixup! Add breadcrumbs on Experiments and Tasks pages 2021-03-08 11:51:11 +01:00
Urban Rotnik
96ef0c10da
Merge pull request #3148 from urbanrotnik/ur-sci-5450-remamber-user-view-mode 
Store Table/Cards view setting per user [SCI-5450]
 2021-03-08 11:48:33 +01:00
aignatov-bio
df4297f6f7 Merge branch 'develop' into features/local_file_previews 2021-03-08 11:30:47 +01:00
Urban Rotnik
235f19cf25 Store Table/Cards view setting per user 
SCI-5450
 2021-03-04 14:56:59 +01:00
Oleksii Kriuchykhin
d557739f2e Remove notification service check from health check endpoint [SCI-5526] 2021-03-04 09:38:25 +01:00
Urban Rotnik
401224ae11 Add breadcrumbs on Experiments and Tasks pages 2021-03-04 09:00:58 +01:00
Urban Rotnik
8ca8c84efd Fix report completed_on time and username (partially) 
SCI-5439
We cannot realy on last_modified_by, because it can be changed after step completion
 2021-02-25 13:24:21 +01:00
Oleksii Kriuchykhin
bdd717b21b Refactor view project users modal [SCI-5387] 2021-02-22 22:37:32 +01:00
Miha Mencin
63dd680385
Merge pull request #3177 from urbanrotnik/ur-sci-5514 
Fix repository empty index show condition [SCI-5514]
 2021-02-22 10:56:02 +01:00
Urban Rotnik
42f8062fe0 Fix repository empty index show condition 2021-02-22 10:18:52 +01:00
aignatov-bio
58a5126a13 Fix normalize_module_position method [SCI-5508] 2021-02-19 14:41:57 +01:00
Urban Rotnik
2daf5aad2a
Merge pull request #3168 from urbanrotnik/ur-sci-5493-external-protocols-preview 2021-02-18 14:50:30 +01:00
Oleksii Kriuchykhin
7d89088b14 Multiple small bugfixes [SCI-5494] 2021-02-18 13:55:03 +01:00
Urban Rotnik
6851746bf6 Fix HTTParty request after gem upgrade 2021-02-17 13:34:26 +01:00
mlorb
20dc9967f5
Merge pull request #3113 from mlorb/ml-sci-5311 
Implement the option of deleting empty folders [SCI-5311]
 2021-02-15 10:27:05 +01:00
Mojca Lorber
b600f22248 Add no results page on experiment page 2021-02-12 12:12:26 +01:00
Mojca Lorber
7071f4a6c5 Send selected folders param to modal 2021-02-11 18:27:16 +01:00
aignatov-bio
bcc9d6c85c Fix sort for experiments page [SCI-5479] 2021-02-11 15:38:10 +01:00
aignatov-bio
1eff3494fb Fix archived experiments page routes and clean old archive page [SCI-5479] 2021-02-11 14:21:15 +01:00
Mojca Lorber
19733ba7d9 Refactor deleting of empty folders 2021-02-10 22:11:42 +01:00
aignatov-bio
8adbd11197 Fix archived project routes and experiment archived date [SCI-5477] 2021-02-10 15:05:53 +01:00
mlorb
45da42b924
Merge branch 'develop' into ml-sci-5311 2021-02-07 19:20:09 +01:00
aignatov-bio
2972fac96e
Merge pull request #3140 from aignatov-bio/ai-sci-5407-add-folders-link-to-search 
Add folder links to global search [SCI-5407]
 2021-02-05 15:24:23 +01:00
aignatov-bio
7c99eaed8f Add folder links to global search [SCI-5407] 2021-02-05 12:39:26 +01:00
Mojca Lorber
ad61e59593 Change the title Projects to folder/subfolder title [SCI-5456] 2021-02-05 11:04:58 +01:00
Oleksii Kriuchykhin
c62c464902 Implement editing options and modals for experiment card [SCI-5367] 2021-02-04 12:06:51 +01:00
Alex Kriuchykhin
1466ae114f
Merge pull request #3027 from okriuchykhin/ok_SCI_5246 
Remove Demo project and Samples inventory [SCI-5246][SCI-5248]
 2021-02-04 11:28:09 +01:00
Oleksii Kriuchykhin
8a0a0cbacc Add view only project users modal for project card [SCI-5337] 2021-02-04 11:25:35 +01:00
aignatov-bio
a7a948abaf Add archive/restore toolbar buttons and backend [SCI-5457] 2021-02-03 14:29:50 +01:00
aignatov-bio
7726eae4da Add experiments page load logic and connect filters [SCI-5457] 2021-02-03 14:29:50 +01:00
Oleksii Kriuchykhin
6b2a94f045 Add empty repositories index page [SCI-5248] 2021-02-01 15:02:08 +01:00
Oleksii Kriuchykhin
324c268594 Remove Demo project and Samples repository [SCI-5246][SCI-5248] 2021-02-01 15:02:06 +01:00
aignatov-bio
8be9d3b14c
Merge pull request #3126 from biosistemika/features/new-experiments-page 
Features/new experiments page
 2021-01-29 13:28:11 +01:00
Oleksii Kriuchykhin
75da67b937 Update Rails to 6.1.1, ruby to 2.7.2 [SCI-5459] 2021-01-28 14:43:45 +01:00
Oleksii Kriuchykhin
b872c6fd14 Add breadrumbs to project experiments page [SCI-5369] 2021-01-25 16:06:48 +01:00
Urban Rotnik
ebbbfa657c
Fix folders activities [SCI-5402] [SCI-5403] (#3112) 
* Fix activities and make folders clickable

* Remove archive project activity and action

* Save nil value for root folder

* Add empty values to hash
 2021-01-22 11:24:08 +01:00
Mojca Lorber
c58d5734ad Implement the option of deleting empty folders [SCI-5311] 2021-01-21 19:42:25 +01:00
Alex Kriuchykhin
adb9442677
Small bugfixes [SCI-5432] (#3107) 2021-01-21 11:24:25 +01:00
Urban Rotnik
33b68b8aa7 Fix permissions for result deletion 2021-01-20 09:00:45 +01:00
Alex Kriuchykhin
f15d984d47
Fix navigation between archived and active projects [SCI-5419] (#3100) 
* Fix navigation between archived and active projects [SCI-5419]
 2021-01-19 11:28:59 +01:00
Urban Rotnik
eae3a7fc16 Scope exported projects to visible_to user 2021-01-19 10:57:30 +01:00
Urban Rotnik
ddbc22b274 Fix folders exports, add error message 
SCI-5351
 2021-01-19 09:47:42 +01:00
Urban Rotnik
05bcb7c502
Merge pull request #3086 from urbanrotnik/ur-sci-5394-missing-archived-results 
Fix missing results of archived task [SCI-5394]
 2021-01-15 13:53:13 +01:00
Urban Rotnik
c9bbc64751 Fix missing results of archived task 
[SCI-5394]
 2021-01-15 11:40:25 +01:00
aignatov-bio
adb9084787
Fix comments red dot and ordering of comments [SCI-5384] (#3084) 
* Fix comments red dot and ordering of comments [SCI-5384]
 2021-01-14 16:28:11 +01:00
Oleksii Kriuchykhin
8d3a605571 Fix projects index page JS initialization [SCI-5380] 2021-01-14 13:08:29 +01:00
Urban Rotnik
ef82fcc5ee
Merge pull request #3075 from urbanrotnik/ur-sci-5379-clean-folder-info 
Remove project_folder in callback [SCI-5379]
 2021-01-12 15:17:16 +01:00
Alex Kriuchykhin
5f506b7459
Merge pull request #3072 from okriuchykhin/ok_SCI_5383 
Fix folder creation for archived view [SCI-5383]
 2021-01-12 13:50:20 +01:00
Oleksii Kriuchykhin
78ec862a2c Fix folder creation for archived view [SCI-5383] 2021-01-12 13:06:43 +01:00
Urban Rotnik
485aa0d541 Remove project_folder in callback 2021-01-12 13:04:36 +01:00
Urban Rotnik
3ad14e06b2
Merge pull request #3067 from urbanrotnik/ur-sci-5379-clean-folder-info 
Remove project_folder reference on project archive [SCI-5379]
 2021-01-12 11:27:08 +01:00
Alex Kriuchykhin
04f68facd3
Merge pull request #3064 from okriuchykhin/ok_SCI_5344 
Add Restore button to the archived Projects screen [SCI-5344]
 2021-01-12 10:59:39 +01:00
Urban Rotnik
baba7fc9e7 Remove project_folder reference on project archive [SCI-5379] 2021-01-11 13:54:21 +01:00
aignatov-bio
e88848cd75
Fix comments counter [SCI-5371] (#3063) 2021-01-11 10:03:13 +01:00
Oleksii Kriuchykhin
684674952c Add Restore button to the archived Projects screen [SCI-5344] 2021-01-09 21:27:19 +01:00
Urban Rotnik
427b5d7107
Merge pull request #3059 from biosistemika/features/folders 
Features/folders into develop
 2021-01-08 06:26:44 +01:00
Urban Rotnik
6f155913ff
Merge pull request #3056 from urbanrotnik/ur-sci-5334-move-project-folders-feature 
Move projects/folders modal [SCI-5334]
 2021-01-07 17:45:19 +01:00
Urban Rotnik
5d79eaa843 Pass projects mode(archived/active) to move_to modal for list [SCI-5334] 2021-01-07 17:42:05 +01:00
Urban Rotnik
20acd9b693 Fix controller and tests 2021-01-07 17:41:39 +01:00
aignatov-bio
276d6abe19
Update archive navigation for tasks page [SCI-5347] (#3052) 
* Update archive navigation for tasks page [SCI-5347]
 2021-01-07 17:18:52 +01:00