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Author SHA1 Message Date
Alex Kriuchykhin db7c6435b3
Merge pull request #1851 from okriuchykhin/ok_SCI_3436 
Implement saving of attachments ordering on steps [SCI-3436]
 2019-06-20 11:31:15 +02:00
aignatov-bio 9653f16196
Convert image to base64 in PDF reports [SCI-3557] (#1835) 
* Convert image to base64 in PDF reports

* Fix typo error
 2019-06-19 13:57:04 +02:00
aignatov-bio 7a3eedf461
Adding missing avatars to comments (#1838) 2019-06-14 16:20:13 +02:00
Oleksii Kriuchykhin 6e1a7a3392 Implement saving of attachments ordering on steps [SCI-3436] 2019-06-11 10:08:33 +02:00
aignatov-bio d207cf5dce
Refactored comments over SciNote [SCI-3505] (#1808) 
* Preparing helpers for comments

* Refactored comments over scinote

* Update events
 2019-06-04 14:40:21 +02:00
Anton Ignatov c9a29b12ba Merge branch 'master' into features/marvinjs-integration 2019-05-31 10:27:14 +02:00
aignatov-bio 2de2ead723
Refactor avatar image appearance across Scinote [SCI-3482] (#1787) 
* Refactor avatar appearance across Scinote
 2019-05-21 15:19:44 +02:00
Oleksii Kriuchykhin 882c12cd31 Remove protocol description from preview popup [SCI-3485] 2019-05-20 15:04:54 +02:00
Anton Ignatov 259b75a6ba Merge branch 'master' into features/marvinjs-integration 2019-05-16 09:28:48 +02:00
Miha Mencin 5ff344c208
Merge pull request #1746 from biosistemika/lm-sci-3426 
Changes to create new office file button [SCI-3426]
 2019-05-13 10:55:58 +02:00
aignatov-bio d3aa6371cd
Fix report saving [SCI-3443] (#1753) 
* Fix report saving

* Fix the report saving by using the reports' structures

* Remove uneccesary yarn.lock (mistake)
 2019-05-13 10:55:08 +02:00
aignatov-bio 364f903b3c
Fix protocol preview name (#1749) 2019-05-13 10:17:47 +02:00
aignatov-bio 0b194eb3b1
Revert "Fix report saving (#1748)" (#1752) 
This reverts commit 3db6129808.
 2019-05-13 09:09:36 +02:00
aignatov-bio 3db6129808
Fix report saving (#1748) 2019-05-13 08:58:47 +02:00
Luka Murn b78caef915 Fix the file preview modal so it supports WOPI_ENABLED == false 2019-05-10 16:41:11 +02:00
Anton Ignatov f80d881847 Fix markup 2019-04-28 19:11:41 +02:00
Anton Ignatov 2847ec7609 Add env variable and check for MarvinJS available 2019-04-28 17:08:18 +02:00
Anton Ignatov 46f0e0c0c2 Add marvin js assets to assets sort and name field 2019-04-27 12:46:45 +02:00
Urban Rotnik c41413234c Use MS office icons for MS files 2019-04-26 09:29:39 +02:00
Urban Rotnik 11a7a975af Merge branch 'features/scinote-improvements' into master-with-note-section 2019-04-23 14:50:03 +02:00
Urban Rotnik b1dabaca15 New helper for file thumbnails 2019-04-23 13:50:48 +02:00
Anton Ignatov aa2dab2014 Merge branch 'features/note-section' into master-with-note-section 2019-04-23 10:31:37 +02:00
mlorb 1e3d0e901a
Merge pull request #1667 from mlorb/ml-sci-3304 
Fix links in activity message for protocols in repository [SCI-3304]
 2019-04-15 11:55:08 +02:00
Anton Ignatov dd8b3caf65 Fix duplicate activtiy issue and fix link to inventory 2019-04-15 11:35:30 +02:00
Mojca Lorber 252fdaf9a8 Fix links in activity message for protocols in repository 2019-04-12 15:14:41 +02:00
Urban Rotnik ee3dc571e1 Update attachments view, add ordering on FE 2019-04-09 14:17:40 +02:00
Anton Ignatov 811f07a62c Update API endpoints for new activities 2019-04-08 15:07:45 +02:00
Jure Grabnar b12916b828 Add main functionality 2019-04-04 17:05:25 +02:00
Oleksii Kriuchykhin d6bd703ec8 Fix activity genereation with discarded inventories [SCI-3290] 2019-04-03 21:18:48 +02:00
Oleksii Kriuchykhin 8c2b2513b0 Fix user popup in global activities [SCI-3285] 2019-04-03 12:53:52 +02:00
Urban Rotnik 86ddbc68b6 fixup! Show date actual value without link 2019-04-02 14:21:06 +02:00
Urban Rotnik 8eaeeee9f8 Show date actual value without link 2019-04-02 13:15:34 +02:00
Urban Rotnik 73dd6678ee Fix for show date value 2019-04-02 10:36:11 +02:00
Urban Rotnik dc0c629798 Fix to show report name in Activities 2019-04-01 15:58:28 +02:00
Urban Rotnik 0ed96d68de Add step position for steps in Protocol repository. Add default value for blank names also. 2019-04-01 15:58:17 +02:00
Alex Kriuchykhin b3aa6be23d
Merge pull request #1621 from okriuchykhin/ok_SCI_3255 
Add global activities to reports [SCI-3255]
 2019-04-01 15:07:06 +02:00
Jure Grabnar e165459ef5
Merge pull request #1574 from jbargu/jg_sci_3149_3163 
Valid smart annotation links of smart annotation imported within protocol [SCI-3149, 3163]
 2019-04-01 14:32:54 +02:00
Oleksii Kriuchykhin 98e58ff7eb Add global activities to reports [SCI-3255] 2019-04-01 11:26:51 +02:00
Urban Rotnik 03dcc91cf1 Fix showing result icon when result is deleted 2019-04-01 09:58:13 +02:00
Oleksii Kriuchykhin 5008339d81 Add handling of links for objects from another team [SCI-3229][SCI-3241] 2019-03-28 14:56:34 +01:00
Oleksii Kriuchykhin d7d45bec70 Fix links for archived objects in global activities [SCI-3229] 2019-03-28 13:43:50 +01:00
Miha Mencin 8e12e0f5b3 [SCI-3236] showing font-awesome icon based on result type 2019-03-26 17:04:31 +01:00
Miha Mencin 4a87216a3d
Merge branch 'master' into features/global-activities 2019-03-25 14:35:24 +01:00
Anton Ignatov bc58f0aecd Merge branch 'features/note-section' into ai-sci-3131-improve-image-file-upload 2019-03-21 11:48:51 +01:00
Anton Ignatov 07c2819163 refactoring tinymce image uploading 2019-03-20 14:46:54 +01:00
Jure Grabnar 5de51f9c58 Prevent smart annotations accessing other teams when importing protocol 
Closes SCI-3163
 2019-03-20 12:58:22 +01:00
Mojca Lorber 4f9814b884 Merge branch 'features/global-activities' of github.com:biosistemika/scinote-web into ml-sci-3021 2019-03-20 11:03:00 +01:00
Oleksii Kriuchykhin b46f3566ef Fix rendering of HTML in RTE fields [SCI-3111] 2019-03-19 23:32:24 +01:00
Mojca Lorber d1e38e5bc9 Project activities refactoring 2019-03-19 15:33:57 +01:00
Urban Rotnik fe35c805b7 Add model breadcrumbs, update activities_helper 2019-03-19 14:01:06 +01:00
Oleksii Kriuchykhin a822227383 Add rich text editor to task and protocol description [SCI-3062][SCI-3071] 2019-03-14 16:27:33 +01:00
Oleksii Kriuchykhin ded74044de Fix circle icon in image editor [SCI-2855] 2019-03-11 15:10:38 +01:00
Oleksii Kriuchykhin 0930277c4e Add views and helpers for global activities individual cards [SCI-2994][SCI-3024] 2019-02-27 16:02:53 +01:00
mz3944 f6c8af105d
Merge pull request #1434 from mz3944/mz-SCI-2903 
Fix (unite) Date and Time display formats [SCI-2903]
 2019-01-21 09:50:34 +01:00
Matej Zrimšek 838455af0d Fix protocols.io Date handling at import 2019-01-12 19:28:45 +01:00
Alex Kriuchykhin be514fd62d
Merge pull request #1445 from okriuchykhin/ok_SCI_2931 
Fix image URLs in export all document [SCI-2931]
 2019-01-11 12:03:06 +01:00
Oleksii Kriuchykhin ec28db6f4f Fix image URLs in export all document [SCI-2931] 2019-01-10 14:19:40 +01:00
Oleksii Kriuchykhin 2769add4d9 Disable edit button for unsupported WOPI formats [SCI-2904] 2018-12-31 18:10:12 +01:00
Matej Zrimšek b74105abc2 Fix Date and Time display formats 2018-12-23 20:30:09 +01:00
Alex Kriuchykhin ab0924c8e6
Merge pull request #1415 from okriuchykhin/ok_SCI_2864 
Use built-in methods for Postgres extensions enabling [SCI-2864]
 2018-12-16 19:45:56 +01:00
Oleksii Kriuchykhin 7cd1c12a4f Use built-in methods for Postgres extensions enabling [SCI-2864] 2018-12-10 14:14:49 +01:00
Oleksii Kriuchykhin 60a19734b2 Enable caching for navigation sidebar [SCI-2757] 2018-11-29 11:28:36 +01:00
Alex Kriuchykhin 20e2cbf0ca
Merge pull request #1391 from okriuchykhin/ok_SCI_2880 
Fix smart annotations rendering issues [SCI-2880]
 2018-11-28 09:47:20 +01:00
Oleksii Kriuchykhin d67abfda2c Additional fixies for smart annotations [SCI-2880] 2018-11-26 15:17:18 +01:00
Jure Grabnar 6ec2c99a28 Hound styling 2018-11-26 13:52:01 +01:00
Jure Grabnar 0086e4dcf3 Catch some of templates error when import protocols.io 2018-11-26 13:43:05 +01:00
Jure Grabnar c7d108ec16 Update according to Hound 
Closes [SCI-2790]
 2018-11-23 20:52:07 +01:00
Jure Grabnar 2834edb286 Add command/subprotocol/safety for PIO 2018-11-23 20:13:34 +01:00
Jure Grabnar c00b08b101 Add sw_package and dataset component for PIO 2018-11-23 19:44:10 +01:00
Jure Grabnar 5ab2556632 Importing of protocols now works 2018-11-23 18:54:37 +01:00
Jure Grabnar 2c8a7f8eca Add last_modified evaluation for PIO import 2018-11-23 17:51:47 +01:00
Jure Grabnar 87d5e5029a Fix publish_date in PIO import 2018-11-23 17:37:26 +01:00
Jure Grabnar 76c2da4bae Add uniq tables 2018-11-23 16:30:29 +01:00
Oleksii Kriuchykhin 537de596a7 Merge latest master [SCI-2778] 2018-11-14 13:05:57 +01:00
Luka Murn 84df2c81f9 Merge branch 'features/export-all' 
Conflicts:
	app/controllers/experiments_controller.rb
	app/controllers/my_modules_controller.rb
	db/schema.rb
 2018-11-13 09:14:02 +01:00
Oleksii Kriuchykhin 8d0dbc7076 Add time format selection to settings [SCI-2778] 2018-11-09 16:19:40 +01:00
Oleksii Kriuchykhin 81d751974d Fix helpers to use with export all [SCI-2793] 2018-10-22 14:32:10 +02:00
Matej Zrimšek 46da1e6b7d Fix handling relative URLs in export all PDF after rebase; minor refactoring [SCI-2641] 2018-10-15 07:13:41 +02:00
Matej Zrimšek 9fb5520970 Refactor/match exported filenames in export all PDF [SCI-2641] 2018-10-15 05:54:19 +02:00
Matej Zrimšek 17380ba0ca Refactoring rebased code [SCI-2641] 2018-10-15 01:12:25 +02:00
Matej Zrimšek 67d51a8880 Refactor ReportsHelper#render_report_element 2018-10-12 07:40:22 +02:00
Matej Zrimšek aa30cf6130 Refactor StringUtility#to_filesystems_compatible_filename [SCI-2641] 2018-10-12 07:40:22 +02:00
Matej Zrimšek 1575da6edb Make filenames and folder names in export all PDF compatible with filesystems (improved function should be used from another PR) [SCI-2641] 2018-10-12 07:40:22 +02:00
Matej Zrimšek d970576d60 Switch between generating report PDF and export all PDF [SCI-2641] 2018-10-12 07:40:21 +02:00
Matej Zrimšek c0dc4f6951 Add hyperlinks to inventories' *.csv files in export all PDF [SCI-2641] 2018-10-12 07:40:21 +02:00
Matej Zrimšek ed6dfc90b0 Also shorten too long folder names, fix filename shortening [SCI-2641] 2018-10-12 07:40:21 +02:00
Matej Zrimšek 7152d2f0f1 Fix/update file naming convection for exported files [SCI-2641] 2018-10-12 07:40:21 +02:00
Matej Zrimšek 6f77c4772c Minor fix for assets & tables naming in export all PDF 2018-10-12 07:40:21 +02:00
Matej Zrimšek 0ebce8e283 Add relative links (not working) to files and tables into the PDF [SCI-2641] 2018-10-12 07:40:21 +02:00
Zanz2 b26530a02f Found a new, and more elegant fix inside controller with Luka 2018-08-28 14:48:23 +02:00
Oleksii Kriuchykhin 6669beaf0e Change icons throughout the rest of application [SCI-2445] 2018-07-27 15:27:08 +02:00
Zmago Devetak 5a1615825d
removes unneeded comment 2018-07-11 09:29:10 +02:00
zmagod 8fe1977ca8 adds skip_user_status parameter to popover_for_user_name function in order to keep the functionality more extendable [fixes SCI-1334] 2018-07-10 15:34:07 +02:00
Oleksii Kriuchykhin c0232d9eb2 Add extend for task child elements in reports [SCI-2377] 2018-06-19 14:34:36 +02:00
mlorb 0a8bfdb860 Reposition the arrow for opening/closing of Navigation 2018-06-01 13:18:49 +02:00
Luka Murn b3ae1d8fa6 Remove some dead code, make sidebar toggle animated 2018-05-27 16:24:47 +02:00
mlorb c4ecfc4d38 Change icons throughout sciNote - navigation, project, task cards 2018-05-22 16:55:58 +02:00
mlorb 81392362ac Final button colour changes 2018-05-18 16:24:24 +02:00
zmagod b125863baf Merge branch 'ux-release-1' of https://github.com/biosistemika/scinote-web into zd_SCI_2371 2018-05-17 11:25:33 +02:00
zmagod ca0c8cbb71 fixes typos, fixes pdf rendering 2018-05-17 11:21:34 +02:00
zmagod 87369ae16b fixes ajax error in repositories [fixes SCI-2399] 2018-05-16 15:08:50 +02:00
mlorb 7df40e56c7 UI/UX restyle - fixes throughout application part one 2018-05-08 16:33:42 +02:00
Zmago Devetak a6275062b7
Merge pull request #1126 from ZmagoD/zd_SCI_2344 
adds new string truncation method [fixes SCI-2344]
 2018-05-07 16:30:12 +02:00
zmagod 0b721d86b1 adds new string truncation method [fixes SCI-2344] 2018-05-03 14:24:23 +02:00
mlorb 88d5ba369d
Merge branch 'ux-release-1' into ml-sci-2244 2018-04-26 14:07:03 +02:00
Luka Murn cb6fe50832 Merge branch 'master' into ux-release-1 
Conflicts:
	app/assets/javascripts/repositories/index.js
 2018-04-26 11:38:54 +02:00
mlorb 9e11f3b220 update buttons positions and wording throughout app 2018-04-25 13:57:12 +02:00
Luka Murn caab0cf55c Update the ordering upon table load 2018-04-20 12:31:22 +02:00
mlorb d7eccac289
Merge pull request #1099 from mlorb/ml-sci-2167 
Remove breadcrumbs throughout application [SCI-2167]
 2018-04-19 16:11:37 +02:00
mlorb c149b3cc2a refactoring 2018-04-19 15:12:26 +02:00
Zmago Devetak 540dff25e7
Merge pull request #1091 from ZmagoD/zd_SCI_2254 
adds correct preview images to files [fixes SCI-2254]
 2018-04-19 14:04:24 +02:00
zmagod 0adc06b1a1 adds edit repository item permission to normal user [fixes SCI-2297] 2018-04-13 13:11:29 +02:00
zmagod 9812a9f160 adds correct preview images to files [fixes SCI-2254] 2018-04-13 09:43:14 +02:00
zmagod b4deb232c0 rename variable: not_in_repository => display_image_tag 2018-04-12 13:40:17 +02:00
zmagod 233e73c709 adds asset preview link to repository row modal and to table row item [fixes SCI-2110] 2018-04-10 17:06:53 +02:00
Zmago Devetak eca69cfc75
Merge pull request #1080 from ZmagoD/zd_SCI_2076 
add asset field preview/sort/search in repository table [fixes SCI-2076]
 2018-04-09 14:29:45 +02:00
zmagod b51ad84ee5 add asset field preview/sort/search in repository table [fixes SCI-2076] 2018-04-06 12:03:39 +02:00
Zmago Devetak 71531ebf12
refactor 2018-04-05 16:46:09 +02:00
zmagod c0cc6c293a fixes tiny_mce pdf report in filesystem storage mode [fixes SCI-2279] 2018-04-05 13:15:32 +02:00
zmagod a8a19df06d Merge branch 'ux-release-1' of https://github.com/biosistemika/scinote-web into zd_SCI_2218_2219 2018-04-05 08:51:58 +02:00
okriuchykhin e608d629c7
Merge pull request #1068 from okriuchykhin/ok_SCI_2217 
Refactor file preview modal [SCI-2217]
 2018-04-05 00:18:43 +02:00
zmagod 525a1c15ca fixes hound 2018-04-04 16:40:07 +02:00
zmagod 0c05c60ebf Merge branch 'ux-release-1' of https://github.com/biosistemika/scinote-web into zd_SCI_2218_2219 2018-04-04 16:06:38 +02:00
Zmago Devetak d1f3a65279
Merge pull request #1073 from ZmagoD/zd_SCI_2206 
add ID column to repository [fixes SCI-2206]
 2018-04-04 15:39:59 +02:00
Oleksii Kriuchykhin 3b7977ee3b Merge latest changes from ux-release-1 [SCI-2217] 2018-04-04 14:20:34 +02:00
zmagod e630d3113f add ID column to repository [fixes SCI-2206] 2018-04-04 11:55:11 +02:00
Oleksii Kriuchykhin cc5d8550b1 Refactor file preview modal [SCI-2217] 2018-03-30 11:50:28 +02:00
zmagod 56b0900619 Merge branch 'ux-release-1' of https://github.com/biosistemika/scinote-web into zd_SCI_2218_2219 2018-03-29 16:42:10 +02:00
zmagod 659a088058 refactor smart annotation parser, adds repository item to smart annotation parser [fixes SCI-2222] 2018-03-29 15:55:26 +02:00
zmagod baf69461f5 adds edit/create modal and related actions 2018-03-23 16:00:33 +01:00
mlorb 9aa87a17e5 remove help helper 2018-03-23 14:26:53 +01:00
mlorb 35afc06cbd
Merge pull request #1038 from mlorb/ml-sci-2118 
Code left-side menu bar [SCI-2118]
 2018-03-20 14:40:55 +01:00
mlorb e0926ddc3c code refactoring 2018-03-20 13:53:11 +01:00
zmagod 1cdba5e0d3 Merge branch 'samples_to_repositories_table_migration' of https://github.com/biosistemika/scinote-web into zd_SCI_2068 2018-03-16 11:05:16 +01:00
mlorb 9de998e85c code left-side menu bar 2018-03-14 14:33:34 +01:00
Zanz2 bf34d82791 refactored to PR 2018-03-13 17:42:26 +01:00
Zanz2 97c01c386b pushing fix 2018-03-10 22:48:25 +01:00
zmagod 0baa7a1f99 fix hound 2018-03-09 14:43:12 +01:00
zmagod 26883af386 fix assigned ordering 2018-03-08 17:36:10 +01:00
Oleksii Kriuchykhin 156a639e4c Remove extra permission checks from WOPI buttons [SCI-2134][SCI-2133] 2018-03-06 17:36:40 +01:00
zmagod fb66131e29 setup endpoint for repository_rows paging/search 2018-03-06 16:32:39 +01:00
mz3944 bb21f6543c
Merge pull request #1004 from mz3944/mz-SCI-2011 
Wrapping up the permissions [SCI-2011]
 2018-03-06 07:10:40 +01:00
Zanz2 8f5dd3df38
Merge pull request #1003 from Zanz2/table_missing_scrollbar_sci1818 
Table missing scrollbar [SCI-1818]
 2018-03-05 17:13:06 +01:00
Zanz2 1e6f1acef5 fixed according to pr 2018-03-05 17:02:37 +01:00
Zanz2 451d14c2e9 Added 4 to constants too, then fixed line too long error 2018-03-05 16:48:18 +01:00
Zanz2 c5728c4018
Merge branch 'master' into null_step_crash_sci2043 2018-03-05 16:37:24 +01:00
Zanz2 e3e7514049 removed redundant return 2018-03-05 16:15:33 +01:00
Zanz2 554b31e0aa Added constants 2018-03-05 16:09:06 +01:00
Zanz2 ba67446eee quick fix for if previous guid is unknown format 2018-03-03 22:26:00 +01:00
Zanz2 5bcda7f6de fixed pr 2018-03-02 23:02:35 +01:00
Zanz2 350f12bdbc using dig method now 2018-03-02 22:29:51 +01:00
Luka Murn 070450f813 Merge branch 'release-1.12.11' 
Conflicts:
	config/initializers/extends.rb
 2018-03-01 14:04:57 +01:00
Oleksii Kriuchykhin aa933ad1f4 Add extendable file types mappings for icons [PIP-46] 2018-02-26 14:23:02 +01:00
Zanz2 29aea1ebd2 refactored according to PR 2018-02-21 16:17:53 +01:00
Zanz2 9c2a2956e3 Merge branch 'table_missing_scrollbar_sci1818' of github.com:Zanz2/scinote-web into table_missing_scrollbar_sci1818 
Merging Biosis master with branch that resizes small tables to atleast 5x5
 2018-02-19 17:40:13 +01:00
Matej Zrimšek b8b9707c06 Fixed protocol and archive permission calls, fixed result permissions; module group managing is now also allowed on newly created groups; other permission call fixes and some refactoring. 2018-02-19 14:51:14 +01:00
Zanz2 673901fb01
Merge pull request #984 from Zanz2/yellow_flashv3_SCI1834 
Fixed tables getting cut when certain attributes are at max length [SCI-1834]
 2018-02-16 12:52:51 +01:00
Matej Zrimšek 5bda53eebf Overall refactoring of all canaid permissions and code related to their calls. 2018-02-16 10:54:06 +01:00
Matej Zrimšek 4fe669ca9a Removed permissions helper and updated the remaining calls to its methods with the new canaid gem permissions. 2018-02-16 10:53:22 +01:00
Zanz2 fab9180b7b fixed small oversight 2018-02-15 23:40:09 +01:00
Zanz2 c963c948a1 Fixed main issue, bad step structure now gets fixed to empty template 2018-02-15 23:28:20 +01:00
Zanz2 95501eb046 saving work for later 2018-02-15 20:01:36 +01:00
Matej Zrimšek 6b1fee4d30 Added/joined repository record assignment to task with sample assignmment to task. 2018-02-14 14:39:10 +01:00
Matej Zrimšek 8ef6c8f91f Refactored remaining experiment level permissions (and everything below it). 2018-02-14 14:39:07 +01:00
Matej Zrimšek d6e7ef465c Grouped remaining permissions for experiment, protocol, task, and partially step levels. [SCI-1964] 2018-02-14 14:19:22 +01:00
Matej Zrimšek 854333b0e6 Grouped permissions for experiment with canaid gem (WIP). 2018-02-14 14:19:00 +01:00
Matej Zrimšek d423700e84 Used permissions where they were missing. 2018-02-14 13:16:32 +01:00
Matej Zrimšek 321ddc2916 Grouped existing project permissions and used 'canaid' gem. 2018-02-14 13:09:45 +01:00
Zanz2 a6356d2420 Fixed newline styling, now code is styled in newlines, and since \n doesnt work i change it to <br> with gsub and that allows code to be written into multiple lines 2018-02-07 14:46:25 +01:00
Zanz2 efaf5ad721 Commands now get styled like code 2018-02-07 13:51:22 +01:00
Zanz2 a6e93b8e35 Fixed hound line too long 2018-02-07 13:04:02 +01:00
Zanz2 e56c0bb100 Tables are now always atleast 5x5, like in scinote when creating new table 2018-02-07 10:55:44 +01:00
Zanz2 f7f46a094e Fixed PR and a mistake i made 2018-02-07 09:53:49 +01:00
Zanz2 167cbc98e5
Merge branch 'master' into yellow_flashv3_SCI1834 2018-02-07 09:42:56 +01:00
Zanz2 80735f2412 Fixed the bug with big text difference in preview and imported protocol 2018-02-07 09:26:45 +01:00
Zanz2 a37d4f3cde there are always now atleast 5 rows, like in edit table in repository, so it adds empty rows if there are not atleast 5 originally 2018-02-06 15:46:03 +01:00
Zanz2 a2df9777f6
Merge pull request #983 from Zanz2/gen_rep_empty_sci-2000 
fixed empty table name unable to generate reports bug [SCI-2000]
 2018-02-06 14:34:31 +01:00
Zanz2 83e9550feb
Merge pull request #966 from Zanz2/images_not_imported_SCI1807 
Images not imported [SCI-1807]
 2018-02-06 14:33:35 +01:00
Zanz2 f9c6eafe49 most protocol attributes, and step description and step expected result now dont get cut tables when they are at max character limit 2018-02-06 12:04:24 +01:00
Zanz2 9b5ddc6789 moved code from older branch to new master 2018-02-06 11:03:17 +01:00
Zanz2 748af2cbf7 Fixed the issue, table name defaults to empty string space now 2018-02-06 10:29:49 +01:00
mlorb 553039b7b4 fix type error at changing task at navigation bar after seting due date 2018-01-30 13:29:54 +01:00
Zanz2 0607579d06 Fixes the database error i was having on home machine too, wasnt exclusive to me 2018-01-27 14:57:07 +01:00
Zanz2 70a972c264 Fixed pr and small oversight 2018-01-27 14:33:01 +01:00
Zanz2 98b3ddbdb0
Merge branch 'master' into images_not_imported_SCI1807 2018-01-26 15:13:40 +01:00
Zanz2 a15e624b06
Merge pull request #965 from Zanz2/sub_prot_2short_SCI1995 
Changed sub protocol name length limit to limit of protocol titles on scinote [SCI-1995]
 2018-01-26 15:08:03 +01:00
Zanz2 48b48c945c Refactored hound errors, now that rubocop works 2018-01-26 11:17:49 +01:00
Zanz2 020e9ddc16 Merge branch 'images_not_imported_SCI1807' of https://github.com/Zanz2/scinote-web into images_not_imported_SCI1807 2018-01-26 11:08:47 +01:00
Zanz2 a48fc168a9 deleted un needed function 2018-01-26 11:05:19 +01:00
Zanz2 6f56f829da Now protocols name from attached protocol is shortened based on title limit length (255 characters),also has same limitations as scinote title 2018-01-26 10:49:38 +01:00
Zanz2 4ee51959eb fixed hound 2018-01-26 09:56:59 +01:00
Zanz2 4ed1555ebb small fix, ordering 2018-01-26 09:45:41 +01:00
Zanz2 346f9feaef Refactored pull request, but also just did a quick fix on a bug where special characters in titles of steps (% & #) got escaped by sanitize helper, now the string gets sanitized first, then the special characters get unescaped by CGI. unescape html 2018-01-26 09:34:58 +01:00
Zanz2 24e772d7e5 Merge branch 'steps_order_SCI1816' of https://github.com/Zanz2/scinote-web into steps_order_SCI1816 2018-01-26 08:26:38 +01:00
Zanz2 00ac774fde Made images now display in protocol description, before_start, warning,guidelines, manuscript_citation, and also in Step description and step expected result 2018-01-24 13:40:13 +01:00
Zanz2 7fe1c20ebe Finished the protocol reorder functions and implemented them 2018-01-24 09:31:43 +01:00
Zanz2 96253c1089 Made some functions to help solve reordering of the protocols io steps 2018-01-23 18:40:23 +01:00
zmagod f8a3fca2db Merge branch 'master' of https://github.com/biosistemika/scinote-web into decoupling 2018-01-23 11:06:33 +01:00
Zanz2 b105920d4e
Merge pull request #901 from Zanz2/code_refactor 
Protocols.io code beautification and refactoring [SCI-1929]
 2018-01-12 12:34:00 +01:00
Zmago Devetak 0e6931b1f3
Merge pull request #908 from ZmagoD/zd_SCI_1866 
Wrong date at activity
 2018-01-08 14:20:26 +01:00
zmagod eb8124ea5a follow @duco 's suggestions 2018-01-05 17:08:00 +01:00
mlorb 99185871c4 fix naming things 2018-01-05 15:15:50 +01:00
Zanz2 7bad722553 Made small oversight and fixed it 2017-12-24 02:06:14 +01:00
Zanz2 83e1b04c7a Fixed pull request 2017-12-24 01:49:04 +01:00
Zanz2 53561ffd84 Refactored according to PR 2017-12-15 20:39:15 +01:00
mlorb 2936770c01 refactor can view team users ATWHO permission 2017-12-14 14:18:18 +01:00
mlorb 7c1ae6bc82 refactor manage repository permissions 2017-12-14 14:18:18 +01:00
mlorb 2918a9833d refactor manage repository column permissions 2017-12-14 14:18:18 +01:00
mlorb 3f5e9e60b7 refactor view repository permission 2017-12-14 14:18:18 +01:00
mlorb 079ac7a4d3 refactor manage repository row permissions 2017-12-14 14:18:18 +01:00
mlorb 740ecc674b refactor view repositories permission 2017-12-14 14:18:18 +01:00
mlorb 3ca51f097f refactor manage sample permissions again by removing authorship and refactor manage sample elements permissions 2017-12-14 14:18:17 +01:00
mlorb 29f9414839 refactor create project permission 2017-12-14 14:18:17 +01:00
mlorb 72023c7dfe refactor update/delete sample permissions 2017-12-14 14:18:17 +01:00
mlorb b09377cd8d refactor update sample permission 2017-12-14 14:18:17 +01:00
mlorb f801ed8eb6 refactor view/export samples permission 2017-12-14 14:18:16 +01:00
mlorb 0d37f9c85a refactor clone protocol permission 2017-12-14 14:18:16 +01:00
mlorb f6d36ae6a2 refactor update protocol type in repository 2017-12-14 14:18:16 +01:00
mlorb 806fcbce36 refactor update protocol in repository permission 2017-12-14 14:18:16 +01:00
mlorb e0d1ae174e refactor read protocol in repository permission 2017-12-14 14:18:15 +01:00
mlorb ccc2451494 refactor create sample permissions 2017-12-14 14:18:15 +01:00
mlorb 43c01b74b1 refactor create protocol permission 2017-12-14 14:18:14 +01:00
mlorb a0b2d3f5ef refactor read_team permission 2017-12-14 14:18:14 +01:00
Zmago Devetak 00be4460cc
Merge pull request #806 from ZmagoD/disable_tiny_mce_asset_unless_step 
Fixes bug with embedded images [SCI-1624]
 2017-12-12 09:53:24 +01:00
Oleksii Kriuchykhin 6256acdfea Rename notifications settings accessor [SCI-1864] 2017-12-07 13:59:33 +01:00
Zanz2 b0012ab936 Simplified repeating method calls 2017-12-03 16:50:06 +01:00
Zanz2 fcbd956d6e Finished code beautification 2017-12-03 01:17:49 +01:00
Zanz2 835ac6910f Code refactor part 1 2017-12-02 00:29:47 +01:00
Zmago Devetak 205d3b3d8f
Merge pull request #894 from ZmagoD/zd_SCI_1650 
Adds task to copy images [fixes SCI-1650]
 2017-12-01 17:32:09 +01:00
zmagod 7442684846 fix protocol preview, remove unneeded functions, fix copy paste tokens 2017-11-28 14:16:20 +01:00
zmagod e233fbe1d8 fix image removing from tinymce 2017-11-28 11:01:07 +01:00
zmagod e69e9f6794 remove unneeded comment and add tiny_mce_asset regex in a constant 2017-11-24 17:04:01 +01:00
zmagod 066c782cd2 Merge branch 'master' of https://github.com/biosistemika/scinote-web into disable_tiny_mce_asset_unless_step 2017-11-24 16:29:32 +01:00
Zanz2 0e574b2f15 removed un needed limits 2017-11-24 11:49:57 +01:00
Zanz2 e7e37939a9 quick fix to expected result losing html 2017-11-24 11:18:12 +01:00
Zanz2 dc5904aed9 Fixed this jira issue and added workarounds for bugs 2017-11-24 01:45:40 +01:00
mlorb c46d630f0b
Merge pull request #891 from mlorb/ml-sci-1617 
Add copying of TinyMce assets when cloning the protocol [SCI-1617]
 2017-11-23 14:31:29 +01:00
Zanz2 764e5259d1 Fixed last review, and a bug i found 2017-11-22 23:38:22 +01:00
Mojca Lorber fe5828fa97 add copying of TinyMce assets when cloning the protocol 2017-11-22 16:47:21 +01:00
Zanz2 692ed62d6d made case statement nicer 2017-11-21 21:27:19 +01:00
Zanz2 f577bf93b5 Fixed pull request review 2017-11-21 19:20:15 +01:00
Zanz2 8226322e92 Fixed open html tags on truncate 2017-11-21 11:42:42 +01:00
Zanz2 529d988cc3 closing html tags 2017-11-21 11:15:09 +01:00
Zanz2 d8c809ffd0 Reviewed pull request 2017-11-20 23:19:34 +01:00
Zanz2 e943df9176 fixed small rubocop error 2017-11-20 01:02:02 +01:00
Zanz2 cf66d94d45 Reworked functions into one function, defined all protocols.io attributes as dynamic constants, applied length checking to all protocols.io attribute fields 2017-11-20 00:59:32 +01:00
Zanz2 99b16f339d New maximums, functions reworked 2017-11-17 15:16:17 +01:00
Zanz2 fa25a6785b Made the propper files and functionality for the text truncation to function 2017-11-17 02:43:32 +01:00
Zanz2 c44465817d Added the functions and put in limitations from my validations files, changed controller name, added some locals 2017-11-16 20:03:44 +01:00
mlorb cd6799d571
Merge pull request #866 from biosistemika/protocols-io-import 
Protocols io import
 2017-11-13 11:53:28 +01:00
Zanz2 e26adc2905 Quick formatting fix 2017-11-12 15:41:50 +01:00
Zanz2 e7384ac38d Code review fixes, made seperate helper file 2017-11-12 15:31:04 +01:00
Luka Murn 82f982e983 Merge branch 'rails-5.1' into decoupling-settings-page 
Conflicts:
	Gemfile
	Gemfile.lock
 2017-10-23 10:59:10 +02:00
Luka Murn 8254153bb9 Merge branch 'master' into rails-5.1 
Conflicts:
	Gemfile
	Gemfile.lock
	app/models/connection.rb
	app/models/experiment.rb
	app/models/my_module.rb
 2017-10-23 08:57:57 +02:00
Luka Murn 4e06b5c397 Revert "Revert "Add Add-ons page to User -> Settings -> Account [SCI-1675]"" 2017-10-17 13:17:49 +02:00
Luka Murn 4d8f2665d3 Revert "Add Add-ons page to User -> Settings -> Account [SCI-1675]" 2017-10-17 13:10:02 +02:00
Luka Murn 2fb2b90da3 Merge pull request #820 from Ducz0r/lm-sci-1675 
Add Add-ons page to User -> Settings -> Account [SCI-1675]
 2017-10-16 13:05:43 +02:00
okriuchykhin db9a031581 Merge pull request #813 from okriuchykhin/ok_SCI_1642 
Refactor canvas [SCI-1642]
 2017-10-12 17:45:34 +02:00
gazvoda 88f03a0706 Merge pull request #735 from gazvoda/lg-SCI-1249-v2 
Truncate checklist items in activity modal [fixes SCI-1249]
 2017-10-12 15:58:05 +02:00
Luka Murn fe89b942e7 Add Add-ons page to User -> Settings -> Account 
Closes SCI-1675.
 2017-10-11 14:15:37 +02:00
lenart de3c18509f Variable name changes, added comments to code [fixes SCI-1249] 2017-10-06 17:12:15 +02:00
Oleksii Kriuchykhin b26b963e54 Optimize update canvas SQL and remove module group name [SCI-1642] 2017-10-05 16:19:25 +02:00
zmagod ef1025e0ee fixes hound 2017-10-02 18:11:54 +02:00
zmagod 3dc3ed906f fixes bug with embedded images [fixes SCI.1624] 2017-10-02 18:06:42 +02:00
Luka Murn e078ae4f77 Merge branch 'rails-5.1' into decoupling-settings-page 2017-09-21 08:36:09 +02:00
zmagod 478bd491ff added pagination and sorting to team tables 2017-08-28 17:05:09 +02:00
Luka Murn 9227ea5854 Finish the user settings jsonb, also fix references throughout app 
Closes SCI-1475.
 2017-08-10 14:29:01 +02:00
lenart e781dfc6a6 Truncate activity taking smart annotations into account fixes [SCI-1249] 2017-08-02 15:51:32 +02:00
Matej Zrimšek 07fea16d26 Fix permissions for editing and deleting custom repository custom columns. [SCI-1524] 2017-07-28 12:01:11 +02:00
Luka Murn 3e80f761b8 Add "about" modal, prepare hooks, VERSION system for addons 
Also the addon generator is fixed so it properly creates VERSION
file for new addons.
 2017-07-10 15:27:50 +02:00
lenart 58e2575c75 Truncate checklist items in activity modal [fixes SCI-1249] 2017-07-07 15:56:16 +02:00
zmagod 7b9410f02f fixes smart annotations bug in reports [fixes SCI-1328] 2017-06-27 11:26:32 +02:00
zmagod 2b2f513366 fixes export pdf error on production 2017-06-22 16:40:50 +02:00
zmagod bad52ceff1 Merge branch 'master' of https://github.com/biosistemika/scinote-web into zd_SCI_1336 2017-06-21 15:56:07 +02:00
Mojca Lorber 39dd6daabb small fixes 2017-06-19 15:30:38 +02:00
Mojca Lorber 107aa76e55 fix bug with audit trail - ajax error 2017-06-14 14:48:22 +02:00
okriuchykhin 97a94ff4a3 Merge pull request #679 from okriuchykhin/ok_SCI_1345 
Fix repository view permissions for team guests [SCI-1345]
 2017-06-13 15:47:44 +02:00
mlorb 074a47aae1 Merge pull request #675 from mlorb/ml_sci_1272 
Fix permissions [SCI-1272]
 2017-06-13 10:51:04 +02:00
Oleksii Kriuchykhin 2d693a3fb7 Fix repository view permissions for team guests [SCI-1345] 2017-06-13 10:33:08 +02:00
Luka Murn 2e2f07bf58 Merge pull request #668 from Ducz0r/lm-sci-1335 
Fix sidebar for repositories [SCI-1335]
 2017-06-13 09:37:33 +02:00
Luka Murn c3d289291f Fix case statement 
Closes SCI-1335.
 2017-06-13 09:09:07 +02:00
Zmago Devetak 6cdf37041f Merge pull request #663 from ZmagoD/zd_SCI_1328 
fixes bug with smart annotations in reports [fixes SCI-1328]
 2017-06-13 08:57:09 +02:00
zmagod a865253a2e first run 2017-06-13 08:10:10 +02:00
Mojca Lorber 9108102b42 fix permissions 2017-06-12 17:34:36 +02:00
Luka Murn e26337d5ee Merge pull request #671 from biosistemika/custom-repositories 
Merge custom-repositories into master
 2017-06-09 18:46:47 +02:00
Luka Murn 481a48c953 Hound is love, Hound is life 2017-06-09 12:51:33 +02:00
Luka Murn cfb734704e Fix sidebar for repositories 
Closes SCI-1335.
 2017-06-09 12:49:23 +02:00
zmagod e45c2ce560 fixes bug with smart annotations in reports [fixes SCI-1328] 2017-06-08 13:41:27 +02:00
Luka Murn 2ab31aba2f Merge pull request #660 from Ducz0r/lm-sci-1270 
Copy repository functionality [SCI-1270]
 2017-06-08 11:45:57 +02:00
Luka Murn 38361e4bb4 Setup initial GUI 2017-06-07 18:43:48 +02:00
Luka Murn 02dd6636ba Allow saving & editing of reports with repository elements 
Closes SCI-1279.
 2017-06-07 16:55:00 +02:00
Oleksii Kriuchykhin 8b1190060e Add custom repository table [SCI-1274] 2017-06-07 15:23:25 +02:00
Mojca Lorber 51c4eeb106 renaming 2017-06-06 15:50:43 +02:00
Mojca Lorber dde714d78f fix hound 2017-06-06 13:33:57 +02:00
Mojca Lorber da98788031 small code fixes 2017-06-06 09:57:50 +02:00
Mojca Lorber 13bf4ad229 create new repository 2017-06-06 09:54:39 +02:00
Luka Murn 62d97f6e64 Merge pull request #655 from Ducz0r/lm-sci-1321 
Fix bug with TinyMCE not working for steps with nil description [SCI-1321]
 2017-06-06 07:59:24 +02:00
Luka Murn f298ec54e7 Code beautification per @zmagod's request 
Closes SCI-1321.
 2017-06-06 07:58:46 +02:00
Luka Murn 8c7aebbb88 Fix bug with TinyMCE not working for steps with nil description 
Closes SCI-1321.
 2017-06-05 17:43:03 +02:00
Matej Zrimšek 419d638163 Renamed reposiotry edit and destroy permission helper. [fix 1269] 2017-06-05 17:36:26 +02:00
Mojca Lorber 27d3a5097b fix hound 2017-06-05 16:07:21 +02:00
Matej Zrimšek 5c9a453439 Added permissions for deleting and renaming of repositories. [SCI-1269] 2017-06-02 17:50:34 +02:00
Mojca Lorber 7c2b657b0e fix bug with special characters when truncating activities titles 2017-06-01 15:10:26 +02:00
Mojca Lorber d88b21fb5e truncate all titles in activities 2017-06-01 15:09:01 +02:00
Luka Murn fcc3995049 Merge pull request #647 from biosistemika/master 
Bring latest master changes into custom-repositories
 2017-05-30 14:18:14 +02:00
Matej Zrimšek 19ffd77d32 Requests failed if smart annotation referenced a user who was no longer in the team. [fixes SCI-1305] 2017-05-26 18:14:15 +02:00
Oleksii Kriuchykhin 157b1630b9 Add missing include for sinitize_input [SCI-1309] 2017-05-25 16:28:06 +02:00
mlorb 58ac457d38 fix merge bug 2017-05-23 11:32:02 +02:00
mlorb 872f712be8 Merge branch 'custom-repositories' into ml_sci_1266_v2 2017-05-23 11:05:25 +02:00
Mojca Lorber 9ae615264d add global repositories screen - tab control 2017-05-22 17:54:30 +02:00
Oleksii Kriuchykhin e99e3edb7b Add repositories dropdown to task navigation [SCI-1273] 2017-05-18 14:21:00 +02:00
Oleksii Kriuchykhin ad39d09a53 Disable turbolinks on search links to fix JS errors [SCI-452] 2017-05-12 13:23:29 +02:00
Zmago Devetak 9911c0d148 Merge pull request #613 from ZmagoD/zd_SCI_1241_v3 
replace all ActionController::Base.helpers.sanitize calls with custom…
 2017-05-11 14:30:26 +02:00
zmagod 80a0af8c9f replace all ActionController::Base.helpers.sanitize calls with custom sanitize_input method [fixes SCI-1241] 2017-05-11 11:36:47 +02:00
okriuchykhin f239238064 Merge pull request #611 from okriuchykhin/ok_SCI_1252 
Fix root_url method unavailable in application_helper [SCI-1252]
 2017-05-11 11:15:00 +02:00
Oleksii Kriuchykhin 229693ec61 Fix root_url method unavailable in application_helper [SCI-1252] 2017-05-10 18:15:08 +02:00
zmagod 511f39e093 add constants 2017-05-10 15:33:33 +02:00
zmagod 10db322307 fixes input sanitize method [fixes SCI-1248] 2017-05-10 14:57:11 +02:00
Zmago Devetak 13570ba5cb Merge pull request #602 from ZmagoD/zd_SCI_1247 
fixes pdf export and image size [fixes SCI-1247]
 2017-05-10 09:31:55 +02:00
Zmago Devetak cd503580b2 Merge pull request #599 from ZmagoD/zd_SCI_1241 
fix samples bug [SCI-1241]
 2017-05-09 15:55:43 +02:00
Mojca Lorber 7ca62a16bb fix hound 2017-05-09 14:55:23 +02:00
Mojca Lorber e1475fbfef fix bug with avatar in system log 2017-05-09 14:40:02 +02:00
zmagod 2d69896897 fixes pdf export and image size [fixes SCI-1247] 2017-05-09 13:59:59 +02:00
zmagod df13478186 fix samples bug [SCI-1241] 2017-05-09 11:25:00 +02:00
Zmago Devetak 4b816f5322 Merge pull request #568 from ZmagoD/zd_SCI_1119 
Add images to fields with rich text formatting
 2017-05-08 13:06:58 +02:00
zmagod d6f303581f refactor 2017-05-08 12:56:33 +02:00
Zmago Devetak e47bf8f013 Merge pull request #582 from ZmagoD/zd_SCI_1051 
fix reports pdf for user annotation [SCI-1051]
 2017-05-08 10:24:40 +02:00
zmagod b22350136f adds label to step in report [fixes SCI-488] 2017-05-05 09:45:18 +02:00
zmagod 289a148332 refactor 2017-05-03 15:33:23 +02:00
zmagod 5b58824ec0 refactor 2017-05-03 15:30:08 +02:00
zmagod 1b618e88e5 fix reports pdf for user annotation [SCI-1051] 2017-05-03 10:50:43 +02:00
osboxes.org 21a39fc704 Code indentation corrected [fixes SCI-1214] 2017-04-28 10:31:14 +01:00
osboxes.org f72802f9f2 Tab Teams is highlighted when in Audit trails [fixes SCI-1214] 2017-04-26 16:31:44 +01:00
zmagod 1fefeee3d1 adds team space related methods 2017-04-25 13:44:31 +02:00
zmagod 66f43803c0 refactor, fix user annotation bug 2017-04-24 16:22:25 +02:00
zmagod 55c8c498e2 add image upload functionality to result text 2017-04-24 12:28:27 +02:00
zmagod 550f563666 working version for steps first run 2017-04-21 16:09:04 +02:00
zmagod c25df63a14 add tinymce img importer and refactor input sanitize helper 2017-04-19 09:11:52 +02:00
okriuchykhin 0fe84c4e24 Merge pull request #550 from okriuchykhin/ok_SCI_1157 
Improve speed of search [SCI-1157]
 2017-04-12 13:11:26 +02:00
Oleksii Kriuchykhin 07d658ab82 Improve speed of search [SCI-1157] 2017-04-11 14:55:44 +02:00
Zmago Devetak 91793c295a Merge pull request #542 from ZmagoD/zd_SCI_825 
Smart annotations and Notifications
 2017-04-10 15:10:17 +02:00
zmagod 90faeec410 fixes typos and protocol step links 2017-04-10 11:21:28 +02:00
zmagod 9bb1bb3f9b refactor [fixes SCI-825] 2017-04-06 15:08:03 +02:00
zmagod d331911ffe completed step annotations 2017-04-06 08:42:16 +02:00
Mojca Lorber a0fe47a05d change helper method for user info popover 2017-04-04 15:22:41 +02:00
zmagod 99c116f257 first run 2017-04-04 09:19:43 +02:00
Oleksii Kriuchykhin 2faa137f67 Add user popover method for users [SCI-1127] 2017-04-03 15:10:00 +02:00
zmagod 239a44c26b change send to public_send 2017-03-24 16:25:50 +01:00
zmagod 4635a3320d Merge branch 'master' of https://github.com/biosistemika/scinote-web into zd_SCI_1003_add_extends 2017-03-24 16:09:28 +01:00
zmagod 5cc6cd094e refactor 2017-03-17 16:47:58 +01:00
zmagod 95a0f596b7 adds file link 2017-03-17 16:40:57 +01:00
zmagod 856a4611c6 Merge branch 'master' of https://github.com/biosistemika/scinote-web into zd_SCI_1003_add_extends 2017-03-14 15:58:08 +01:00
zmagod b821fff4a5 adds non breaking space between file name and buttons 2017-03-13 14:14:44 +01:00
zmagod 7b16e5643e fix assets preprocesor for wopi files 2017-03-13 13:20:49 +01:00
zmagod 0c2523beca Merge branch 'master' of https://github.com/biosistemika/scinote-web into office_integration 2017-03-10 16:21:43 +01:00
mlorb 39e1ac4b26 Merge pull request #512 from biosistemika/ml_sci_1074 
Fix permissions for experiment actions [SCI-1074]
 2017-03-10 11:44:27 +01:00
Mojca Lorber 1ba5f1748f fix permissions for experiment actions 2017-03-09 17:45:34 +01:00
zmagod 1d42d46c02 fixes bug with step comments 2017-03-09 16:02:52 +01:00
zmagod 9939d8df06 refactor 2017-03-09 10:51:54 +01:00
zmagod f78ef8c82a fixes hound 2017-03-08 14:41:42 +01:00
zmagod 5c2e9a4b04 adds extends and fixes report methods 2017-03-08 14:14:03 +01:00
Oleksii Kriuchykhin 0f8336e5a5 Refactoring of the comments using STI [SCI-1090] 2017-03-08 13:18:20 +01:00
Mojca Lorber f84611f558 fix report - checklist items are in separate row than checkboxes 2017-02-22 15:51:26 +01:00
okriuchykhin 8e18ff44a6 Merge pull request #479 from okriuchykhin/ok_SCI_999 
Add task complete/uncomplete functionality [SCI-999]
 2017-02-20 15:19:00 +01:00
Oleksii Kriuchykhin 218e96b1f0 Code style fixes [SCI-999] 2017-02-16 11:45:07 +01:00
Luka Murn 164bd787e9 Merge pull request #481 from Ducz0r/lm-sci-958-fix 
Team administrators are Viewers of all Projects in Team [SCI-958]
 2017-02-15 10:40:52 +01:00
Nbernot 97584aabb3 Updated the lists of office online file extensions 
Extended the list of file extensions that receive office online icons and 'open in' text.
 2017-02-14 16:44:03 +01:00
Luka Murn c6ed73bc82 Allow team admins to see all projects, even hidden ones 2017-02-13 13:42:53 +01:00
Oleksii Kriuchykhin cf8566df33 Add task complete/uncomplete functionality [SCI-999] 2017-02-10 14:27:20 +01:00
Luka Murn f7bd62547e Refactor teams settings into its own controllers 2017-02-09 14:37:59 +01:00
Luka Murn 7bee3a4ea0 Move user profile to settings 2017-02-09 11:34:52 +01:00
Mojca Lorber d3e0eca44e redesign individual team page 2017-02-01 14:44:47 +01:00
zmagod e59b2e039a Merge branch 'master' of https://github.com/biosistemika/scinote-web into zd_SCI_939 2017-01-27 11:15:31 +01:00
Luka Murn 3bf447b0f4 Fix bug where reCaptcha form wasn't working 2017-01-26 16:06:29 +01:00
Luka Murn 0baaf12de3 Re-display images & checkboxes in PDF reports 
Closes SCI-953.
 2017-01-26 10:46:58 +01:00
Luka Murn 8c5a52417c Merge pull request #445 from okriuchykhin/ok_SCI_940 
Refactor smart annotation/auto_link/simple_format rendering [SCI-940]
 2017-01-25 17:49:38 +01:00
Oleksii Kriuchykhin c55f3cb99c Add flag to disable simple_format in custom_auto_link [SCI-940] 2017-01-25 17:18:19 +01:00
Oleksii Kriuchykhin 310d8c1920 Refactor smart annotation/auto_link/simple_format rendering [SCI-940] 2017-01-25 17:18:19 +01:00
Oleksii Kriuchykhin 5fe9261595 Fix error when referencing deleted sample in SA [SCI-949] 2017-01-25 15:54:12 +01:00
zmagod a507bb4d1f hound 2017-01-25 15:40:35 +01:00
zmagod f04a2f663a renamed organizations in config/ 2017-01-25 12:30:11 +01:00
zmagod 9ae799d52c rename organization/org/Organization to Team in datatables 2017-01-25 09:48:49 +01:00
Luka Murn 53699193a2 Merge branch 'smart-annotations' 
Conflicts:
	app/assets/javascripts/comments.js.erb
	app/assets/javascripts/protocols/index.js
	app/assets/javascripts/protocols/steps.js.erb
	app/assets/javascripts/samples/sample_datatable.js.erb
	app/controllers/my_module_comments_controller.rb
	app/controllers/project_comments_controller.rb
	app/controllers/result_comments_controller.rb
	app/controllers/step_comments_controller.rb
	app/datatables/sample_datatable.rb
	app/views/my_module_comments/_comment.html.erb
	app/views/project_comments/_comment.html.erb
	app/views/projects/show/_experiment.html.erb
	app/views/reports/elements/_experiment_element.html.erb
	app/views/reports/elements/_result_comments_element.html.erb
	app/views/reports/elements/_result_text_element.html.erb
	app/views/reports/elements/_step_checklist_element.html.erb
	app/views/reports/elements/_step_comments_element.html.erb
	app/views/reports/elements/_step_element.html.erb
	app/views/result_comments/_comment.html.erb
	app/views/results/_result_text.html.erb
	app/views/step_comments/_comment.html.erb
	app/views/steps/_step.html.erb
	db/schema.rb
 2017-01-24 14:33:23 +01:00
Zmago Devetak 40bf293ec7 Merge pull request #441 from ZmagoD/zd_SCI_924 
adds smart annotation in task comments, refactor smart_annotation_par…
 2017-01-24 11:18:41 +01:00
okriuchykhin 7fa1f3d966 Merge pull request #438 from okriuchykhin/ok_SCI_921 
Remove unneeded HTML scrubber in protocol importer [SCI-921]
 2017-01-24 11:02:43 +01:00
zmagod 6e7fa21dd3 adds smart annotation in task comments, refactor smart_annotation_parser method, fix the user popover description [fixes SCI-924] 2017-01-24 10:51:12 +01:00
Oleksii Kriuchykhin 2434c73a0c Remove unneeded HTML scrabber in protocol importer [SCI-921] 2017-01-24 09:52:38 +01:00
zmagod 20cde2654b fixed user without permissions bug [fixes SCI-922] 2017-01-23 10:53:42 +01:00
zmagod 9550c6dd35 fixes highlight.js 2017-01-19 17:09:25 +01:00
zmagod f2d5066dc7 fix some bugs 2017-01-19 11:37:59 +01:00
zmagod 65fa631b1c adding tinyMce first run 2017-01-18 22:40:08 +01:00
Luka Murn cf72da5635 Merge branch 'improved-files-handling' into 'master' 
Conflicts:
	app/assets/javascripts/protocols/steps.js.erb
	app/helpers/assets_helper.rb
	db/schema.rb
 2017-01-18 11:29:40 +01:00
Zmago Devetak 1b9f7db385 Merge pull request #405 from ZmagoD/zd_SCI_832 
Visualization of User smart annotation after saving the field
 2017-01-18 09:36:42 +01:00
okriuchykhin 781a68e0d5 Merge pull request #415 from okriuchykhin/ok_SCI_888 
Add missed space in the string [SCI-888]
 2017-01-18 09:34:51 +01:00
zmagod cb0483a6e6 refactor 2017-01-18 08:34:29 +01:00
Oleksii Kriuchykhin ea8f6a8c6b Fix issue in report editor [SCI-102] 2017-01-17 14:21:59 +01:00
Oleksii Kriuchykhin 0ce71884a5 Add missed space in the string [SCI-888] 2017-01-16 17:09:41 +01:00
Luka Murn a2935c6620 Add sample info modal popup to sample smart annotations 
This MR also loads datatables.js globally (as it's required by
the modal), so I removed it everywhere in code, and it shouldn't
be used anymore (e.g. '//= require datatables').

Closes SCI-892.
 2017-01-16 15:52:02 +01:00
okriuchykhin 02bfd19d1c Merge pull request #385 from okriuchykhin/ok_SCI_102 
Fix XSS on activites and throghout the rest of app [SCI-102]
 2017-01-16 11:41:38 +01:00
zmagod 1b2fa78e42 adds user preview to user smart annotation [fixes SCI-832] 2017-01-13 11:34:10 +01:00