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146 commits

Author SHA1 Message Date
mlorb
0d37f9c85a refactor clone protocol permission 2017-12-14 14:18:16 +01:00
mlorb
f6d36ae6a2 refactor update protocol type in repository 2017-12-14 14:18:16 +01:00
mlorb
806fcbce36 refactor update protocol in repository permission 2017-12-14 14:18:16 +01:00
mlorb
e0d1ae174e refactor read protocol in repository permission 2017-12-14 14:18:15 +01:00
mlorb
43c01b74b1 refactor create protocol permission 2017-12-14 14:18:14 +01:00
mlorb
a0b2d3f5ef refactor read_team permission 2017-12-14 14:18:14 +01:00
Zanz2
835ac6910f Code refactor part 1 2017-12-02 00:29:47 +01:00
Zanz2
bb8aef3b73
Merge pull request #893 from Zanz2/step_desc_2small_SCI-1833 
Fixed validations lengths and added workarounds for bugs [SCI-1833]
 2017-11-24 17:55:20 +01:00
Zmago Devetak
027f4a5921
Merge pull request #890 from ZmagoD/zd_SCI_1651 
export and import RTE images
 2017-11-24 16:28:28 +01:00
Zanz2
dc5904aed9 Fixed this jira issue and added workarounds for bugs 2017-11-24 01:45:40 +01:00
Zanz2
f577bf93b5 Fixed pull request review 2017-11-21 19:20:15 +01:00
zmagod
91fec89cab adds tiny_mce_assets to protocol export 2017-11-21 16:30:48 +01:00
Zanz2
d8c809ffd0 Reviewed pull request 2017-11-20 23:19:34 +01:00
Zanz2
cf66d94d45 Reworked functions into one function, defined all protocols.io attributes as dynamic constants, applied length checking to all protocols.io attribute fields 2017-11-20 00:59:32 +01:00
Zanz2
fa25a6785b Made the propper files and functionality for the text truncation to function 2017-11-17 02:43:32 +01:00
Zanz2
b2e1623cf1 Merge branch 'master' of https://github.com/biosistemika/scinote-web into validations_cutoff_SCI-1784 2017-11-16 20:04:12 +01:00
Zanz2
c44465817d Added the functions and put in limitations from my validations files, changed controller name, added some locals 2017-11-16 20:03:44 +01:00
Zanz2
1b540a75a1 Fixed to use .megabytes 2017-11-16 15:17:13 +01:00
Zanz2
41c1193a78 Fixed unit error;Now when comparing file size, both are in bytes 2017-11-16 01:34:38 +01:00
mlorb
288e3ddcbd
Merge pull request #877 from mlorb/ml-sci-1190 
Fix bug when removing all keywords in protocol [SCI-1190]
 2017-11-15 11:22:18 +01:00
Mojca Lorber
c2a5b52767 fix bug when removing all keywords in protocol 2017-11-14 15:04:37 +01:00
Zanz2
6b9a10ffe4 Made validations for JSON format and .txt and .json files 2017-11-14 12:02:17 +01:00
Zanz2
f35ab78849 Added some code to make the two seperate jira issues work together (protocol info and scinote tables 2017-11-14 00:56:39 +01:00
Zanz2
b265beb386
Merge pull request #864 from Zanz2/move_desc 
Move protocol.io protocol description to step 1 of protocols [SCI-1695]
 2017-11-13 10:07:01 +01:00
Zanz2
23d3ffa5a4 Fixed PR 2017-11-12 15:48:45 +01:00
Zanz2
e7384ac38d Code review fixes, made seperate helper file 2017-11-12 15:31:04 +01:00
Zanz2
fa2c0fe556 merging 2017-11-09 18:55:17 +01:00
Zanz2
812fa3f1d5 Hopefully this will resolve my merge problems 2017-11-09 17:42:17 +01:00
Zanz2
aa03a889c7 Fixed PR review 2017-11-03 16:28:15 +01:00
Zanz2
de9a3a1d0d Preview tables are now functional but with inline javascript , ugly styling and a few major bugs (they dont display fully until you click on them, and i dug deep on the handson table wiki and hot table wiki for issues like this, and while they exist, idk how to implement the solutions because they use angular js mostly 2017-10-28 23:57:29 +02:00
Zanz2
2413dc251a Added new preview tables code 2017-10-28 02:19:22 +02:00
Zanz2
a732c8afa7 Code for protocol repository scinote table elements view 2017-10-26 17:28:27 +02:00
Zanz2
79e0a11054 Fixed before start and link not displaying in protocol description 2017-10-25 17:39:01 +02:00
Zanz2
19b9da2e83 deleted comment 2017-10-24 19:44:34 +02:00
Zanz2
49501b3d3d Finished review refactor 2017-10-24 19:24:53 +02:00
Zanz2
67b09adaeb Fixed last few rubocop errors 2017-10-17 19:43:46 +02:00
Zanz2
6cf775a4b1 Refactored code, made html render on preview too 2017-10-17 19:27:20 +02:00
Zanz2
e72c1bebcb deleted comments 2017-10-12 19:18:22 +02:00
Zanz2
8d0d6f0502 refactored methods 2017-10-12 19:10:16 +02:00
Zanz2
21036a1081 Deleted unnecesarry if's 2017-10-12 17:22:02 +02:00
Zanz2
414a15872c Made seperate method for steps mapping 2017-10-12 17:15:43 +02:00
Zanz2
5d667f146e Moved .js form reset and made a standalone description method 2017-10-11 17:59:09 +02:00
Zanz2
8720222ac2 Added sanitising for all input, this escapes javascript too as far as i know (sanitize_input function from sanitize helper) 2017-10-07 22:45:01 +02:00
Zanz2
183c93d21b Refactoring to git review specifications 2017-10-07 22:13:31 +02:00
Zanz2
9655c98566 Github review refactor 2017-10-07 20:47:05 +02:00
Zanz2
f5b2ad0d34 Refactor github code review 2017-10-07 16:07:04 +02:00
Zanz2
66e5004e60 Changed import text to be inside en.yml, as said in the code review, deleted some blank lines 2017-10-07 15:56:43 +02:00
Zanz2
b23ca33e73 Deleted todo-list comments :D 2017-09-26 16:46:17 +02:00
Zanz2
c72cf6320a Finished rubocop refactoring 2017-09-26 16:19:09 +02:00
Zanz2
8d961c934a Rubocop refactored part of the controller code 2017-09-26 13:17:00 +02:00
Zanz2
2bfe8f0b95 Testing why rubocop gives errors 2017-09-25 15:27:24 +02:00
Zanz2
292c1e3c31 Fixed bug, seems like unconssistent indexes instead of hash values can also happen in steps that arent first 2017-09-25 14:14:27 +02:00
Zanz2
11b2ef3112 Made code nicer, hopefully not unintentionally breaking something 2017-09-25 13:53:32 +02:00
Zanz2
dd4d4072e8 Made code more aesthetic 2017-09-22 16:02:56 +02:00
Zanz2
6ebdea5dce Fixed old workaround with inconsistent protocols.io json formatting and made the workaround nicer (now its only one if statement, instead of one whole block of duplicated code) 2017-09-22 15:12:29 +02:00
Zanz2
deef790951 added validations to controllers (file too big, names too big), some javascript error messagges, and fixed some nil exceptions in controllers appending nil strings to descriptions 2017-09-22 11:56:50 +02:00
Zanz2
1dbb03e22d Added all the fields into description of protocol steps and protocol itself, need to make protocols description format nicer 2017-09-21 16:05:33 +02:00
Zanz2
f48833c47a added format .js response which hides the preview modal and refreshes the page with protocolsDatatable.ajax.reload(); 2017-09-21 08:40:05 +02:00
Zanz2
d59234a1e3 minor changes, working on refresh after submit 2017-09-20 16:04:52 +02:00
Zanz2
72c707ae88 protocol importing into database works, still need to decide how to add other fields from protocols.io to step description and protocol description, but that can be added easily, and need to make it refresh after submit 2017-09-20 15:31:10 +02:00
Zanz2
7b85d74a23 added jquery code to reset file selector selected file after it is canceled in the preview modal 2017-09-20 09:32:31 +02:00
Zanz2
3812b2e64b Removed on modal hide refresh, no longer needed, works without data gets updated without refresh since its not passed by javascript locals anymore 2017-09-20 08:58:00 +02:00
Zanz2
ea8f3e822d Removed all the html bug workarounds since it is now fixed (strip tags and remove " now gone 2017-09-20 08:38:34 +02:00
Zanz2
7aba782639 optimised code so i dont need javascript locals anymore and working to fix infamous html tags bug where second modal doesnt show 2017-09-19 15:02:16 +02:00
Zanz2
f861b1fc52 Configured the controller,the main task ahead is to figure out how to import all of the data i have available 2017-09-15 15:52:55 +02:00
Zanz2
5d6cc341ed added first half of inputs, working on scroller next, page now refreshes after you cancel out of import window, to update the data, will look for alternate way after im done 2017-09-14 14:42:04 +02:00
Zanz2
29b9d50363 Modals now popup correctly trough ajax, added js file for this functionality, and two partials which are reused from existing importer 2017-09-14 11:30:53 +02:00
Zanz2
9fc91aac32 added protocols io upload preview modal 2017-09-13 16:04:16 +02:00
Zanz2
b7432b336a added file upload popup modal, rails routes and controller functions, deleted old standalone model and controller 2017-09-13 15:15:08 +02:00
Mojca Lorber
b1e939e715 add experiment to activities 2017-04-20 13:16:11 +02:00
Oleksii Kriuchykhin
2edebb282a Add team_id field to assets and tables [SCI-1046] 2017-03-23 10:36:55 +01:00
zmagod
0c2523beca Merge branch 'master' of https://github.com/biosistemika/scinote-web into office_integration 2017-03-10 16:21:43 +01:00
Oleksii Kriuchykhin
031741d122 Disable protocols link if user has no teams [SCI-934] 2017-02-01 14:26:51 +01:00
Oleksii Kriuchykhin
c119b7c014 Make sciNote work for users without any teams [SCI_934] 2017-02-01 14:16:26 +01:00
zmagod
c2c5616078 rename Organization to Team in controllers 2017-01-24 17:06:51 +01:00
zmagod
21c2f82582 rename controllers where org/organization 2017-01-24 16:57:14 +01:00
Oleksii Kriuchykhin
d555ba7905 Add export to protocol management page and code style improvements [SCI-742] 2017-01-23 17:43:48 +01:00
Oleksii Kriuchykhin
14a6705b55 Implemented protocol export through Zip::OutputStream [SCI-742] 2017-01-23 17:43:48 +01:00
Oleksii Kriuchykhin
1abd7fc574 Added xml schemas and zip gem [SCI-742] 2017-01-23 17:34:02 +01:00
Oleksii Kriuchykhin
0546716a0b Improve user input sanitization, fix bugs [SCI-102] 2017-01-11 15:50:11 +01:00
Oleksii Kriuchykhin
835e982292 SAnitize AJAX calls in controllers and datatables [SCI-102] 2017-01-05 13:12:22 +01:00
Oleksii Kriuchykhin
cd3924afd3 Sanitize .html_safe marked strings which contain tags [SCI-102] 2017-01-05 13:04:19 +01:00
mlorb
59751ec41e Merge pull request #373 from mlorb/ml_sci_709 
Add Protocol Preview to Protocol repository [SCI-709]
 2017-01-04 11:28:55 +01:00
zmagod
a434649f42 Merge branch 'master' of https://github.com/biosistemika/scinote-web into office_integration 2017-01-03 16:35:25 +01:00
Mojca Lorber
c476faca30 fix hound 2017-01-03 11:04:09 +01:00
Mojca Lorber
e555535dfb add edit button to protocol preview modal 2017-01-03 10:04:14 +01:00
Oleksii Kriuchykhin
d798f1b120 Fix XSS vulnerability in protocol keywords [SCI-632] 2016-12-29 15:15:29 +01:00
Mojca Lorber
40e3240a99 add content to preview modal 2016-12-22 11:43:11 +01:00
zmagod
e554fdf805 code refactor 2016-12-21 16:52:15 +01:00
Mojca Lorber
2cfcba0ceb add protocol preview modal 2016-12-13 10:39:18 +01:00
Oleksii Kriuchykhin
3d25da5db7 Fixed bug with protocol loading from file [SCI-605] 2016-11-03 14:15:22 +01:00
Oleksii Kriuchykhin
e8d20dfc01 Added additional activities [SCI-605] 2016-11-02 10:43:36 +01:00
zmagod
d7f514db09 fixes search 2016-10-17 15:10:26 +02:00
Jure Grabnar
1f67aec258 Prevent destroying protocols when file is edited 
SCI-552 #close
 2016-10-06 16:13:42 +02:00
zmagod
852fe499fb clean up linked protocol 2016-08-12 16:31:40 +02:00
Luka Murn
076b67620f Migration GitLab -> GitHub 2016-07-21 13:11:15 +02:00