Commit graph

272 commits

Author SHA1 Message Date
Anton
6131b6c0b7 Add new templates section and navigation [SCI-7017] 2022-07-26 13:53:51 +02:00
Alex Kriuchykhin
9aeb107635
Fix saving protocol to repository [SCI-6935] (#4190) 2022-07-06 11:45:04 +02:00
Anton
f3fdf25d2f Add activity to bulk step deletion [SCI-6928] 2022-07-04 21:15:19 +02:00
Anton
5296b50c2f Add delete all steps button [SCI-6921] 2022-06-24 11:21:47 +02:00
artoscinote
5c051ef8c1
Implement V2 protocols exporter [SCI-6876] (#4142)
* Implement V2 protocols exporter [SCI-6876]

* Implement new importer [SCI-6877]
2022-06-10 10:18:55 +02:00
Anton
e86a0610b2 Add metadata block in protocol repository [SCI-6869] 2022-06-06 13:56:22 +02:00
Anton
3910fa34f3 Remove protocol creation modal [SCI-6868] 2022-06-03 15:11:51 +02:00
Anton
61464b3780 Add new protocol view to repository [SCI-6858] 2022-06-02 11:05:25 +02:00
artoscinote
19a91fce66
Fix protocol layout issue [SCI-6312] (#3712) 2021-12-01 16:23:46 +01:00
artoscinote
9937d1d913
Add print feature to protocols [SCI-6028] (#3700)
* Add print feature to protocols [SCI-6028]

* Close tab after closing print dialog [SCI-6028]

* CSS linter fixes [SCI-6028]
2021-12-01 11:16:45 +01:00
Oleksii Kriuchykhin
c26dcf4b23 Replace empty? with blank? [SCI-5579] 2021-07-23 11:56:28 +02:00
Oleksii Kriuchykhin
d315b1327b Implement missing missing user smart annotation notifications [SCI-5575] 2021-03-19 17:11:19 +01:00
Urban Rotnik
7c312a844f Fix updating updated_at on protocol while load/sync with repository 2020-09-29 15:37:40 +02:00
Urban Rotnik
d9b691103c Add permission error message 2020-09-08 15:42:30 +02:00
Urban Rotnik
a2ade6e0ec Merge branch 'develop' into features/new-task-layout 2020-05-15 14:27:56 +02:00
Urban Rotnik
de4e4ca967 Add before_action for team switch 2020-04-23 16:20:01 +02:00
aignatov-bio
fe718349da Add recent protocol tab to load protocal from repository 2020-04-09 17:29:39 +02:00
aignatov-bio
0b04ca4012 Fix markup 2019-11-21 12:19:47 +01:00
aignatov-bio
56ae32323c Add autosave for protocol keywords and user preferences 2019-11-20 14:57:53 +01:00
aignatov-bio
1488f75e26 Add activities 2019-11-13 13:57:04 +01:00
aignatov-bio
a9690482d1 Add autosave feature to text fields 2019-11-12 11:26:18 +01:00
Oleksii Kriuchykhin
584f2d07c0 Fix file handling in protocol import/copying [SCI-3935][SCI-3926][SCI-3934] 2019-10-01 13:06:01 +02:00
aignatov-bio
6e5f078dea
Add activities for marvinJS [SCI-3630] (#1950)
* Add marvinJs activities to step and results

* Add activities for TinyMCE marvinJS assets

* Fix markup
2019-08-09 09:47:07 +02:00
Anton Ignatov
57a273d5d0 Merge branch 'activestorage_migration' into features/marvinjs-integration 2019-07-12 11:34:41 +02:00
Oleksii Kriuchykhin
a1941a21dc Futher refactoring of old Paperclip methods [SCI-3539] 2019-07-09 10:28:15 +02:00
Oleksii Kriuchykhin
9d926dc956 Refactor TinyMce assets, user avatars, zip files [SCI-3539] 2019-07-05 16:56:05 +02:00
aignatov-bio
52a2f5cd0e
Add recent protocols dropdown to task page [SCI-3417] (#1800)
* Add recent protocols dropdown to task page
2019-06-13 15:47:29 +02:00
aignatov-bio
d207cf5dce
Refactored comments over SciNote [SCI-3505] (#1808)
* Preparing helpers for comments

* Refactored comments over scinote

* Update events
2019-06-04 14:40:21 +02:00
Alex Kriuchykhin
df59c54bd4
Merge pull request #1776 from okriuchykhin/ok_SCI_3477
Fix protocol metadata editing in repository [SCI-3477]
2019-05-17 09:42:13 +02:00
Oleksii Kriuchykhin
488fc99dae Fix protocol metadata editing in repository [SCI-3477] 2019-05-16 17:11:17 +02:00
Anton Ignatov
652fba0e23 Merge branch 'master-with-note-section' 2019-05-13 11:08:11 +02:00
Anton Ignatov
2e6bab4638 Fix smart anottation to protocols in repository 2019-05-09 09:40:40 +02:00
Oleksii Kriuchykhin
40550f92c9 Improve HTML data escaping in JSON endpoints [SCI-3403] 2019-05-08 17:38:24 +02:00
aignatov-bio
84993ea3ef
Update protocol repository for new description format [SCI-3371] (#1689)
* Update protocol repository for new description format

* move image clone method to concerns
2019-04-24 13:34:56 +02:00
Anton Ignatov
aa2dab2014 Merge branch 'features/note-section' into master-with-note-section 2019-04-23 10:31:37 +02:00
aignatov-bio
6b45dcd475
Update eln export for new tinyMCE image format (#1680) 2019-04-19 14:44:40 +02:00
aignatov-bio
a1047f4597
Fix activities wording [SCI-3287] (#1635)
* Fix activities wording

* Adding project to export protocol
2019-04-04 10:45:35 +02:00
aignatov-bio
e034a0c055
Fix bug with update protocol from repository and modal disable button [SCI-3284] (#1631)
* Fix bug with update protocol from repository and modal disable button
2019-04-03 09:18:18 +02:00
aignatov-bio
e6102c72c7
Adding missed activities [SCI-3253] (#1614)
* Adding missed activties

* Adding test for activities
2019-04-02 11:50:37 +02:00
Mojca Lorber
3c69225d6b Change activities for task protocols 2019-03-29 15:09:20 +01:00
Anton Ignatov
4ec0a3c871 Update TinyMCE image loader for new fields 2019-03-22 10:52:26 +01:00
Mojca Lorber
c55e314ed5 Refactor upon the review requests 2019-03-20 21:34:47 +01:00
Mojca Lorber
cd7a87348f Protocol activities refactoring, without tests 2019-03-19 16:12:07 +01:00
Urban Rotnik
2ea2700837 fixup! Fix failing tests 2019-03-15 10:30:51 +01:00
Urban Rotnik
b33e95e18a New Protocols actions logging 2019-03-12 09:14:53 +01:00
Oleksii Kriuchykhin
3376fd012c Improve error loggin in protocol import [SCI-3023] 2019-02-07 14:00:24 +01:00
Jure Grabnar
6ec2c99a28 Hound styling 2018-11-26 13:52:01 +01:00
Jure Grabnar
0086e4dcf3 Catch some of templates error when import protocols.io 2018-11-26 13:43:05 +01:00
Jure Grabnar
1c7a051551 Catch all errors on PIO import and show message 2018-11-23 20:47:48 +01:00
Zanz2
b26530a02f Found a new, and more elegant fix inside controller with Luka 2018-08-28 14:48:23 +02:00
zmagod
db1944cc90 move maximum file size limit to an ENV variable [fixes SCI-2415] 2018-06-19 14:15:14 +02:00
okriuchykhin
fc06f8c60b
Merge pull request #1055 from okriuchykhin/ok_SCI_2250
Skip asset if file is missing in protocol export [SCI-2250]
2018-03-26 14:19:49 +02:00
zmagod
c61efb0624 rename before_acton hook 2018-03-26 13:07:00 +02:00
Oleksii Kriuchykhin
ecd3c73772 Skip asset if file is missing in protocol export [SCI-2250] 2018-03-25 13:36:24 +02:00
zmagod
c46da5cc67 fixes import protocol bug for guest user [fixes SCI-2197] 2018-03-19 16:10:28 +01:00
mz3944
bb21f6543c
Merge pull request #1004 from mz3944/mz-SCI-2011
Wrapping up the permissions [SCI-2011]
2018-03-06 07:10:40 +01:00
Zanz2
29aea1ebd2 refactored according to PR 2018-02-21 16:17:53 +01:00
Matej Zrimšek
b8b9707c06 Fixed protocol and archive permission calls, fixed result permissions; module group managing is now also allowed on newly created groups; other permission call fixes and some refactoring. 2018-02-19 14:51:14 +01:00
Matej Zrimšek
7b07e7b347 Fixed protocol in repository permissions, and refactored it a bit. 2018-02-16 12:04:11 +01:00
Matej Zrimšek
6ba226d514 Added missing '?' to the canaid permission calls that were missing it. 2018-02-16 11:12:30 +01:00
Matej Zrimšek
5bda53eebf Overall refactoring of all canaid permissions and code related to their calls. 2018-02-16 10:54:06 +01:00
Zanz2
c963c948a1 Fixed main issue, bad step structure now gets fixed to empty template 2018-02-15 23:28:20 +01:00
Zanz2
95501eb046 saving work for later 2018-02-15 20:01:36 +01:00
Matej Zrimšek
1182ce5da1 Fixed experiment level permission checks in the controllers. 2018-02-14 14:19:22 +01:00
Matej Zrimšek
d6e7ef465c Grouped remaining permissions for experiment, protocol, task, and partially step levels. [SCI-1964] 2018-02-14 14:19:22 +01:00
Matej Zrimšek
854333b0e6 Grouped permissions for experiment with canaid gem (WIP). 2018-02-14 14:19:00 +01:00
Zanz2
367eff6401 re-pushing this, this got merged into master already but i accidentally deleted it when merging two branches 2018-02-07 11:17:53 +01:00
Zanz2
dac59cf4d0 Refactored to PR, deleted unrelated things 2018-02-06 09:06:33 +01:00
Zanz2
e8f6dc0d24
Merge pull request #962 from Zanz2/missing_error_SCI1993
A red error messagge is now displayed when not selecting protocol [SCI-1993]
2018-01-26 16:00:15 +01:00
Zanz2
4ee51959eb fixed hound 2018-01-26 09:56:59 +01:00
Zanz2
346f9feaef Refactored pull request, but also just did a quick fix on a bug where special characters in titles of steps (% & #) got escaped by sanitize helper, now the string gets sanitized first, then the special characters get unescaped by CGI. unescape html 2018-01-26 09:34:58 +01:00
Zanz2
24e772d7e5 Merge branch 'steps_order_SCI1816' of https://github.com/Zanz2/scinote-web into steps_order_SCI1816 2018-01-26 08:26:38 +01:00
Zanz2
fc541147c8 A red error messagge is now displayed when selecting no protocol and pressing upload on protocols io import, and after the modal is closed the messagge is gone 2018-01-25 15:54:38 +01:00
Zanz2
7fe1c20ebe Finished the protocol reorder functions and implemented them 2018-01-24 09:31:43 +01:00
zmagod
f8a3fca2db Merge branch 'master' of https://github.com/biosistemika/scinote-web into decoupling 2018-01-23 11:06:33 +01:00
mlorb
99185871c4 fix naming things 2018-01-05 15:15:50 +01:00
mlorb
0d37f9c85a refactor clone protocol permission 2017-12-14 14:18:16 +01:00
mlorb
f6d36ae6a2 refactor update protocol type in repository 2017-12-14 14:18:16 +01:00
mlorb
806fcbce36 refactor update protocol in repository permission 2017-12-14 14:18:16 +01:00
mlorb
e0d1ae174e refactor read protocol in repository permission 2017-12-14 14:18:15 +01:00
mlorb
43c01b74b1 refactor create protocol permission 2017-12-14 14:18:14 +01:00
mlorb
a0b2d3f5ef refactor read_team permission 2017-12-14 14:18:14 +01:00
Zanz2
835ac6910f Code refactor part 1 2017-12-02 00:29:47 +01:00
Zanz2
bb8aef3b73
Merge pull request #893 from Zanz2/step_desc_2small_SCI-1833
Fixed validations lengths and added workarounds for bugs [SCI-1833]
2017-11-24 17:55:20 +01:00
Zmago Devetak
027f4a5921
Merge pull request #890 from ZmagoD/zd_SCI_1651
export and import RTE images
2017-11-24 16:28:28 +01:00
Zanz2
dc5904aed9 Fixed this jira issue and added workarounds for bugs 2017-11-24 01:45:40 +01:00
Zanz2
f577bf93b5 Fixed pull request review 2017-11-21 19:20:15 +01:00
zmagod
91fec89cab adds tiny_mce_assets to protocol export 2017-11-21 16:30:48 +01:00
Zanz2
d8c809ffd0 Reviewed pull request 2017-11-20 23:19:34 +01:00
Zanz2
cf66d94d45 Reworked functions into one function, defined all protocols.io attributes as dynamic constants, applied length checking to all protocols.io attribute fields 2017-11-20 00:59:32 +01:00
Zanz2
fa25a6785b Made the propper files and functionality for the text truncation to function 2017-11-17 02:43:32 +01:00
Zanz2
b2e1623cf1 Merge branch 'master' of https://github.com/biosistemika/scinote-web into validations_cutoff_SCI-1784 2017-11-16 20:04:12 +01:00
Zanz2
c44465817d Added the functions and put in limitations from my validations files, changed controller name, added some locals 2017-11-16 20:03:44 +01:00
Zanz2
1b540a75a1 Fixed to use .megabytes 2017-11-16 15:17:13 +01:00
Zanz2
41c1193a78 Fixed unit error;Now when comparing file size, both are in bytes 2017-11-16 01:34:38 +01:00
mlorb
288e3ddcbd
Merge pull request #877 from mlorb/ml-sci-1190
Fix bug when removing all keywords in protocol [SCI-1190]
2017-11-15 11:22:18 +01:00
Mojca Lorber
c2a5b52767 fix bug when removing all keywords in protocol 2017-11-14 15:04:37 +01:00
Zanz2
6b9a10ffe4 Made validations for JSON format and .txt and .json files 2017-11-14 12:02:17 +01:00
Zanz2
f35ab78849 Added some code to make the two seperate jira issues work together (protocol info and scinote tables 2017-11-14 00:56:39 +01:00
Zanz2
b265beb386
Merge pull request #864 from Zanz2/move_desc
Move protocol.io protocol description to step 1 of protocols [SCI-1695]
2017-11-13 10:07:01 +01:00
Zanz2
23d3ffa5a4 Fixed PR 2017-11-12 15:48:45 +01:00
Zanz2
e7384ac38d Code review fixes, made seperate helper file 2017-11-12 15:31:04 +01:00
Zanz2
fa2c0fe556 merging 2017-11-09 18:55:17 +01:00
Zanz2
812fa3f1d5 Hopefully this will resolve my merge problems 2017-11-09 17:42:17 +01:00
Zanz2
aa03a889c7 Fixed PR review 2017-11-03 16:28:15 +01:00
Zanz2
de9a3a1d0d Preview tables are now functional but with inline javascript , ugly styling and a few major bugs (they dont display fully until you click on them, and i dug deep on the handson table wiki and hot table wiki for issues like this, and while they exist, idk how to implement the solutions because they use angular js mostly 2017-10-28 23:57:29 +02:00
Zanz2
2413dc251a Added new preview tables code 2017-10-28 02:19:22 +02:00
Zanz2
a732c8afa7 Code for protocol repository scinote table elements view 2017-10-26 17:28:27 +02:00
Zanz2
79e0a11054 Fixed before start and link not displaying in protocol description 2017-10-25 17:39:01 +02:00
Zanz2
19b9da2e83 deleted comment 2017-10-24 19:44:34 +02:00
Zanz2
49501b3d3d Finished review refactor 2017-10-24 19:24:53 +02:00
Zanz2
67b09adaeb Fixed last few rubocop errors 2017-10-17 19:43:46 +02:00
Zanz2
6cf775a4b1 Refactored code, made html render on preview too 2017-10-17 19:27:20 +02:00
Zanz2
e72c1bebcb deleted comments 2017-10-12 19:18:22 +02:00
Zanz2
8d0d6f0502 refactored methods 2017-10-12 19:10:16 +02:00
Zanz2
21036a1081 Deleted unnecesarry if's 2017-10-12 17:22:02 +02:00
Zanz2
414a15872c Made seperate method for steps mapping 2017-10-12 17:15:43 +02:00
Zanz2
5d667f146e Moved .js form reset and made a standalone description method 2017-10-11 17:59:09 +02:00
Zanz2
8720222ac2 Added sanitising for all input, this escapes javascript too as far as i know (sanitize_input function from sanitize helper) 2017-10-07 22:45:01 +02:00
Zanz2
183c93d21b Refactoring to git review specifications 2017-10-07 22:13:31 +02:00
Zanz2
9655c98566 Github review refactor 2017-10-07 20:47:05 +02:00
Zanz2
f5b2ad0d34 Refactor github code review 2017-10-07 16:07:04 +02:00
Zanz2
66e5004e60 Changed import text to be inside en.yml, as said in the code review, deleted some blank lines 2017-10-07 15:56:43 +02:00
Zanz2
b23ca33e73 Deleted todo-list comments :D 2017-09-26 16:46:17 +02:00
Zanz2
c72cf6320a Finished rubocop refactoring 2017-09-26 16:19:09 +02:00
Zanz2
8d961c934a Rubocop refactored part of the controller code 2017-09-26 13:17:00 +02:00
Zanz2
2bfe8f0b95 Testing why rubocop gives errors 2017-09-25 15:27:24 +02:00
Zanz2
292c1e3c31 Fixed bug, seems like unconssistent indexes instead of hash values can also happen in steps that arent first 2017-09-25 14:14:27 +02:00
Zanz2
11b2ef3112 Made code nicer, hopefully not unintentionally breaking something 2017-09-25 13:53:32 +02:00
Zanz2
dd4d4072e8 Made code more aesthetic 2017-09-22 16:02:56 +02:00
Zanz2
6ebdea5dce Fixed old workaround with inconsistent protocols.io json formatting and made the workaround nicer (now its only one if statement, instead of one whole block of duplicated code) 2017-09-22 15:12:29 +02:00
Zanz2
deef790951 added validations to controllers (file too big, names too big), some javascript error messagges, and fixed some nil exceptions in controllers appending nil strings to descriptions 2017-09-22 11:56:50 +02:00
Zanz2
1dbb03e22d Added all the fields into description of protocol steps and protocol itself, need to make protocols description format nicer 2017-09-21 16:05:33 +02:00
Zanz2
f48833c47a added format .js response which hides the preview modal and refreshes the page with protocolsDatatable.ajax.reload(); 2017-09-21 08:40:05 +02:00
Zanz2
d59234a1e3 minor changes, working on refresh after submit 2017-09-20 16:04:52 +02:00
Zanz2
72c707ae88 protocol importing into database works, still need to decide how to add other fields from protocols.io to step description and protocol description, but that can be added easily, and need to make it refresh after submit 2017-09-20 15:31:10 +02:00
Zanz2
7b85d74a23 added jquery code to reset file selector selected file after it is canceled in the preview modal 2017-09-20 09:32:31 +02:00
Zanz2
3812b2e64b Removed on modal hide refresh, no longer needed, works without data gets updated without refresh since its not passed by javascript locals anymore 2017-09-20 08:58:00 +02:00
Zanz2
ea8f3e822d Removed all the html bug workarounds since it is now fixed (strip tags and remove " now gone 2017-09-20 08:38:34 +02:00
Zanz2
7aba782639 optimised code so i dont need javascript locals anymore and working to fix infamous html tags bug where second modal doesnt show 2017-09-19 15:02:16 +02:00
Zanz2
f861b1fc52 Configured the controller,the main task ahead is to figure out how to import all of the data i have available 2017-09-15 15:52:55 +02:00
Zanz2
5d6cc341ed added first half of inputs, working on scroller next, page now refreshes after you cancel out of import window, to update the data, will look for alternate way after im done 2017-09-14 14:42:04 +02:00
Zanz2
29b9d50363 Modals now popup correctly trough ajax, added js file for this functionality, and two partials which are reused from existing importer 2017-09-14 11:30:53 +02:00
Zanz2
9fc91aac32 added protocols io upload preview modal 2017-09-13 16:04:16 +02:00
Zanz2
b7432b336a added file upload popup modal, rails routes and controller functions, deleted old standalone model and controller 2017-09-13 15:15:08 +02:00
Mojca Lorber
b1e939e715 add experiment to activities 2017-04-20 13:16:11 +02:00
Oleksii Kriuchykhin
2edebb282a Add team_id field to assets and tables [SCI-1046] 2017-03-23 10:36:55 +01:00
zmagod
0c2523beca Merge branch 'master' of https://github.com/biosistemika/scinote-web into office_integration 2017-03-10 16:21:43 +01:00
Oleksii Kriuchykhin
031741d122 Disable protocols link if user has no teams [SCI-934] 2017-02-01 14:26:51 +01:00
Oleksii Kriuchykhin
c119b7c014 Make sciNote work for users without any teams [SCI_934] 2017-02-01 14:16:26 +01:00