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Author SHA1 Message Date
Zanz2 6f56f829da Now protocols name from attached protocol is shortened based on title limit length (255 characters),also has same limitations as scinote title 2018-01-26 10:49:38 +01:00
Zanz2 4ee51959eb fixed hound 2018-01-26 09:56:59 +01:00
Zanz2 4ed1555ebb small fix, ordering 2018-01-26 09:45:41 +01:00
Zanz2 346f9feaef Refactored pull request, but also just did a quick fix on a bug where special characters in titles of steps (% & #) got escaped by sanitize helper, now the string gets sanitized first, then the special characters get unescaped by CGI. unescape html 2018-01-26 09:34:58 +01:00
Zanz2 24e772d7e5 Merge branch 'steps_order_SCI1816' of https://github.com/Zanz2/scinote-web into steps_order_SCI1816 2018-01-26 08:26:38 +01:00
Zanz2 00ac774fde Made images now display in protocol description, before_start, warning,guidelines, manuscript_citation, and also in Step description and step expected result 2018-01-24 13:40:13 +01:00
Zanz2 7fe1c20ebe Finished the protocol reorder functions and implemented them 2018-01-24 09:31:43 +01:00
Zanz2 96253c1089 Made some functions to help solve reordering of the protocols io steps 2018-01-23 18:40:23 +01:00
zmagod f8a3fca2db Merge branch 'master' of https://github.com/biosistemika/scinote-web into decoupling 2018-01-23 11:06:33 +01:00
Zanz2 b105920d4e
Merge pull request #901 from Zanz2/code_refactor 
Protocols.io code beautification and refactoring [SCI-1929]
 2018-01-12 12:34:00 +01:00
Zmago Devetak 0e6931b1f3
Merge pull request #908 from ZmagoD/zd_SCI_1866 
Wrong date at activity
 2018-01-08 14:20:26 +01:00
zmagod eb8124ea5a follow @duco 's suggestions 2018-01-05 17:08:00 +01:00
mlorb 99185871c4 fix naming things 2018-01-05 15:15:50 +01:00
Zanz2 7bad722553 Made small oversight and fixed it 2017-12-24 02:06:14 +01:00
Zanz2 83e1b04c7a Fixed pull request 2017-12-24 01:49:04 +01:00
Zanz2 53561ffd84 Refactored according to PR 2017-12-15 20:39:15 +01:00
mlorb 2936770c01 refactor can view team users ATWHO permission 2017-12-14 14:18:18 +01:00
mlorb 7c1ae6bc82 refactor manage repository permissions 2017-12-14 14:18:18 +01:00
mlorb 2918a9833d refactor manage repository column permissions 2017-12-14 14:18:18 +01:00
mlorb 3f5e9e60b7 refactor view repository permission 2017-12-14 14:18:18 +01:00
mlorb 079ac7a4d3 refactor manage repository row permissions 2017-12-14 14:18:18 +01:00
mlorb 740ecc674b refactor view repositories permission 2017-12-14 14:18:18 +01:00
mlorb 3ca51f097f refactor manage sample permissions again by removing authorship and refactor manage sample elements permissions 2017-12-14 14:18:17 +01:00
mlorb 29f9414839 refactor create project permission 2017-12-14 14:18:17 +01:00
mlorb 72023c7dfe refactor update/delete sample permissions 2017-12-14 14:18:17 +01:00
mlorb b09377cd8d refactor update sample permission 2017-12-14 14:18:17 +01:00
mlorb f801ed8eb6 refactor view/export samples permission 2017-12-14 14:18:16 +01:00
mlorb 0d37f9c85a refactor clone protocol permission 2017-12-14 14:18:16 +01:00
mlorb f6d36ae6a2 refactor update protocol type in repository 2017-12-14 14:18:16 +01:00
mlorb 806fcbce36 refactor update protocol in repository permission 2017-12-14 14:18:16 +01:00
mlorb e0d1ae174e refactor read protocol in repository permission 2017-12-14 14:18:15 +01:00
mlorb ccc2451494 refactor create sample permissions 2017-12-14 14:18:15 +01:00
mlorb 43c01b74b1 refactor create protocol permission 2017-12-14 14:18:14 +01:00
mlorb a0b2d3f5ef refactor read_team permission 2017-12-14 14:18:14 +01:00
Zmago Devetak 00be4460cc
Merge pull request #806 from ZmagoD/disable_tiny_mce_asset_unless_step 
Fixes bug with embedded images [SCI-1624]
 2017-12-12 09:53:24 +01:00
Oleksii Kriuchykhin 6256acdfea Rename notifications settings accessor [SCI-1864] 2017-12-07 13:59:33 +01:00
Zanz2 b0012ab936 Simplified repeating method calls 2017-12-03 16:50:06 +01:00
Zanz2 fcbd956d6e Finished code beautification 2017-12-03 01:17:49 +01:00
Zanz2 835ac6910f Code refactor part 1 2017-12-02 00:29:47 +01:00
Zmago Devetak 205d3b3d8f
Merge pull request #894 from ZmagoD/zd_SCI_1650 
Adds task to copy images [fixes SCI-1650]
 2017-12-01 17:32:09 +01:00
zmagod 7442684846 fix protocol preview, remove unneeded functions, fix copy paste tokens 2017-11-28 14:16:20 +01:00
zmagod e233fbe1d8 fix image removing from tinymce 2017-11-28 11:01:07 +01:00
zmagod e69e9f6794 remove unneeded comment and add tiny_mce_asset regex in a constant 2017-11-24 17:04:01 +01:00
zmagod 066c782cd2 Merge branch 'master' of https://github.com/biosistemika/scinote-web into disable_tiny_mce_asset_unless_step 2017-11-24 16:29:32 +01:00
Zanz2 0e574b2f15 removed un needed limits 2017-11-24 11:49:57 +01:00
Zanz2 e7e37939a9 quick fix to expected result losing html 2017-11-24 11:18:12 +01:00
Zanz2 dc5904aed9 Fixed this jira issue and added workarounds for bugs 2017-11-24 01:45:40 +01:00
mlorb c46d630f0b
Merge pull request #891 from mlorb/ml-sci-1617 
Add copying of TinyMce assets when cloning the protocol [SCI-1617]
 2017-11-23 14:31:29 +01:00
Zanz2 764e5259d1 Fixed last review, and a bug i found 2017-11-22 23:38:22 +01:00
Mojca Lorber fe5828fa97 add copying of TinyMce assets when cloning the protocol 2017-11-22 16:47:21 +01:00
Zanz2 692ed62d6d made case statement nicer 2017-11-21 21:27:19 +01:00
Zanz2 f577bf93b5 Fixed pull request review 2017-11-21 19:20:15 +01:00
Zanz2 8226322e92 Fixed open html tags on truncate 2017-11-21 11:42:42 +01:00
Zanz2 529d988cc3 closing html tags 2017-11-21 11:15:09 +01:00
Zanz2 d8c809ffd0 Reviewed pull request 2017-11-20 23:19:34 +01:00
Zanz2 e943df9176 fixed small rubocop error 2017-11-20 01:02:02 +01:00
Zanz2 cf66d94d45 Reworked functions into one function, defined all protocols.io attributes as dynamic constants, applied length checking to all protocols.io attribute fields 2017-11-20 00:59:32 +01:00
Zanz2 99b16f339d New maximums, functions reworked 2017-11-17 15:16:17 +01:00
Zanz2 fa25a6785b Made the propper files and functionality for the text truncation to function 2017-11-17 02:43:32 +01:00
Zanz2 c44465817d Added the functions and put in limitations from my validations files, changed controller name, added some locals 2017-11-16 20:03:44 +01:00
mlorb cd6799d571
Merge pull request #866 from biosistemika/protocols-io-import 
Protocols io import
 2017-11-13 11:53:28 +01:00
Zanz2 e26adc2905 Quick formatting fix 2017-11-12 15:41:50 +01:00
Zanz2 e7384ac38d Code review fixes, made seperate helper file 2017-11-12 15:31:04 +01:00
Luka Murn 82f982e983 Merge branch 'rails-5.1' into decoupling-settings-page 
Conflicts:
	Gemfile
	Gemfile.lock
 2017-10-23 10:59:10 +02:00
Luka Murn 8254153bb9 Merge branch 'master' into rails-5.1 
Conflicts:
	Gemfile
	Gemfile.lock
	app/models/connection.rb
	app/models/experiment.rb
	app/models/my_module.rb
 2017-10-23 08:57:57 +02:00
Luka Murn 4e06b5c397 Revert "Revert "Add Add-ons page to User -> Settings -> Account [SCI-1675]"" 2017-10-17 13:17:49 +02:00
Luka Murn 4d8f2665d3 Revert "Add Add-ons page to User -> Settings -> Account [SCI-1675]" 2017-10-17 13:10:02 +02:00
Luka Murn 2fb2b90da3 Merge pull request #820 from Ducz0r/lm-sci-1675 
Add Add-ons page to User -> Settings -> Account [SCI-1675]
 2017-10-16 13:05:43 +02:00
okriuchykhin db9a031581 Merge pull request #813 from okriuchykhin/ok_SCI_1642 
Refactor canvas [SCI-1642]
 2017-10-12 17:45:34 +02:00
gazvoda 88f03a0706 Merge pull request #735 from gazvoda/lg-SCI-1249-v2 
Truncate checklist items in activity modal [fixes SCI-1249]
 2017-10-12 15:58:05 +02:00
Luka Murn fe89b942e7 Add Add-ons page to User -> Settings -> Account 
Closes SCI-1675.
 2017-10-11 14:15:37 +02:00
lenart de3c18509f Variable name changes, added comments to code [fixes SCI-1249] 2017-10-06 17:12:15 +02:00
Oleksii Kriuchykhin b26b963e54 Optimize update canvas SQL and remove module group name [SCI-1642] 2017-10-05 16:19:25 +02:00
zmagod ef1025e0ee fixes hound 2017-10-02 18:11:54 +02:00
zmagod 3dc3ed906f fixes bug with embedded images [fixes SCI.1624] 2017-10-02 18:06:42 +02:00
Luka Murn e078ae4f77 Merge branch 'rails-5.1' into decoupling-settings-page 2017-09-21 08:36:09 +02:00
zmagod 478bd491ff added pagination and sorting to team tables 2017-08-28 17:05:09 +02:00
Luka Murn 9227ea5854 Finish the user settings jsonb, also fix references throughout app 
Closes SCI-1475.
 2017-08-10 14:29:01 +02:00
lenart e781dfc6a6 Truncate activity taking smart annotations into account fixes [SCI-1249] 2017-08-02 15:51:32 +02:00
Matej Zrimšek 07fea16d26 Fix permissions for editing and deleting custom repository custom columns. [SCI-1524] 2017-07-28 12:01:11 +02:00
Luka Murn 3e80f761b8 Add "about" modal, prepare hooks, VERSION system for addons 
Also the addon generator is fixed so it properly creates VERSION
file for new addons.
 2017-07-10 15:27:50 +02:00
lenart 58e2575c75 Truncate checklist items in activity modal [fixes SCI-1249] 2017-07-07 15:56:16 +02:00
zmagod 7b9410f02f fixes smart annotations bug in reports [fixes SCI-1328] 2017-06-27 11:26:32 +02:00
zmagod 2b2f513366 fixes export pdf error on production 2017-06-22 16:40:50 +02:00
zmagod bad52ceff1 Merge branch 'master' of https://github.com/biosistemika/scinote-web into zd_SCI_1336 2017-06-21 15:56:07 +02:00
Mojca Lorber 39dd6daabb small fixes 2017-06-19 15:30:38 +02:00
Mojca Lorber 107aa76e55 fix bug with audit trail - ajax error 2017-06-14 14:48:22 +02:00
okriuchykhin 97a94ff4a3 Merge pull request #679 from okriuchykhin/ok_SCI_1345 
Fix repository view permissions for team guests [SCI-1345]
 2017-06-13 15:47:44 +02:00
mlorb 074a47aae1 Merge pull request #675 from mlorb/ml_sci_1272 
Fix permissions [SCI-1272]
 2017-06-13 10:51:04 +02:00
Oleksii Kriuchykhin 2d693a3fb7 Fix repository view permissions for team guests [SCI-1345] 2017-06-13 10:33:08 +02:00
Luka Murn 2e2f07bf58 Merge pull request #668 from Ducz0r/lm-sci-1335 
Fix sidebar for repositories [SCI-1335]
 2017-06-13 09:37:33 +02:00
Luka Murn c3d289291f Fix case statement 
Closes SCI-1335.
 2017-06-13 09:09:07 +02:00
Zmago Devetak 6cdf37041f Merge pull request #663 from ZmagoD/zd_SCI_1328 
fixes bug with smart annotations in reports [fixes SCI-1328]
 2017-06-13 08:57:09 +02:00
zmagod a865253a2e first run 2017-06-13 08:10:10 +02:00
Mojca Lorber 9108102b42 fix permissions 2017-06-12 17:34:36 +02:00
Luka Murn e26337d5ee Merge pull request #671 from biosistemika/custom-repositories 
Merge custom-repositories into master
 2017-06-09 18:46:47 +02:00
Luka Murn 481a48c953 Hound is love, Hound is life 2017-06-09 12:51:33 +02:00
Luka Murn cfb734704e Fix sidebar for repositories 
Closes SCI-1335.
 2017-06-09 12:49:23 +02:00
zmagod e45c2ce560 fixes bug with smart annotations in reports [fixes SCI-1328] 2017-06-08 13:41:27 +02:00
Luka Murn 2ab31aba2f Merge pull request #660 from Ducz0r/lm-sci-1270 
Copy repository functionality [SCI-1270]
 2017-06-08 11:45:57 +02:00
Luka Murn 38361e4bb4 Setup initial GUI 2017-06-07 18:43:48 +02:00
Luka Murn 02dd6636ba Allow saving & editing of reports with repository elements 
Closes SCI-1279.
 2017-06-07 16:55:00 +02:00
Oleksii Kriuchykhin 8b1190060e Add custom repository table [SCI-1274] 2017-06-07 15:23:25 +02:00
Mojca Lorber 51c4eeb106 renaming 2017-06-06 15:50:43 +02:00
Mojca Lorber dde714d78f fix hound 2017-06-06 13:33:57 +02:00
Mojca Lorber da98788031 small code fixes 2017-06-06 09:57:50 +02:00
Mojca Lorber 13bf4ad229 create new repository 2017-06-06 09:54:39 +02:00
Luka Murn 62d97f6e64 Merge pull request #655 from Ducz0r/lm-sci-1321 
Fix bug with TinyMCE not working for steps with nil description [SCI-1321]
 2017-06-06 07:59:24 +02:00
Luka Murn f298ec54e7 Code beautification per @zmagod's request 
Closes SCI-1321.
 2017-06-06 07:58:46 +02:00
Luka Murn 8c7aebbb88 Fix bug with TinyMCE not working for steps with nil description 
Closes SCI-1321.
 2017-06-05 17:43:03 +02:00
Matej Zrimšek 419d638163 Renamed reposiotry edit and destroy permission helper. [fix 1269] 2017-06-05 17:36:26 +02:00
Mojca Lorber 27d3a5097b fix hound 2017-06-05 16:07:21 +02:00
Matej Zrimšek 5c9a453439 Added permissions for deleting and renaming of repositories. [SCI-1269] 2017-06-02 17:50:34 +02:00
Mojca Lorber 7c2b657b0e fix bug with special characters when truncating activities titles 2017-06-01 15:10:26 +02:00
Mojca Lorber d88b21fb5e truncate all titles in activities 2017-06-01 15:09:01 +02:00
Luka Murn fcc3995049 Merge pull request #647 from biosistemika/master 
Bring latest master changes into custom-repositories
 2017-05-30 14:18:14 +02:00
Matej Zrimšek 19ffd77d32 Requests failed if smart annotation referenced a user who was no longer in the team. [fixes SCI-1305] 2017-05-26 18:14:15 +02:00
Oleksii Kriuchykhin 157b1630b9 Add missing include for sinitize_input [SCI-1309] 2017-05-25 16:28:06 +02:00
mlorb 58ac457d38 fix merge bug 2017-05-23 11:32:02 +02:00
mlorb 872f712be8 Merge branch 'custom-repositories' into ml_sci_1266_v2 2017-05-23 11:05:25 +02:00
Mojca Lorber 9ae615264d add global repositories screen - tab control 2017-05-22 17:54:30 +02:00
Oleksii Kriuchykhin e99e3edb7b Add repositories dropdown to task navigation [SCI-1273] 2017-05-18 14:21:00 +02:00
Oleksii Kriuchykhin ad39d09a53 Disable turbolinks on search links to fix JS errors [SCI-452] 2017-05-12 13:23:29 +02:00
Zmago Devetak 9911c0d148 Merge pull request #613 from ZmagoD/zd_SCI_1241_v3 
replace all ActionController::Base.helpers.sanitize calls with custom…
 2017-05-11 14:30:26 +02:00
zmagod 80a0af8c9f replace all ActionController::Base.helpers.sanitize calls with custom sanitize_input method [fixes SCI-1241] 2017-05-11 11:36:47 +02:00
okriuchykhin f239238064 Merge pull request #611 from okriuchykhin/ok_SCI_1252 
Fix root_url method unavailable in application_helper [SCI-1252]
 2017-05-11 11:15:00 +02:00
Oleksii Kriuchykhin 229693ec61 Fix root_url method unavailable in application_helper [SCI-1252] 2017-05-10 18:15:08 +02:00
zmagod 511f39e093 add constants 2017-05-10 15:33:33 +02:00
zmagod 10db322307 fixes input sanitize method [fixes SCI-1248] 2017-05-10 14:57:11 +02:00
Zmago Devetak 13570ba5cb Merge pull request #602 from ZmagoD/zd_SCI_1247 
fixes pdf export and image size [fixes SCI-1247]
 2017-05-10 09:31:55 +02:00
Zmago Devetak cd503580b2 Merge pull request #599 from ZmagoD/zd_SCI_1241 
fix samples bug [SCI-1241]
 2017-05-09 15:55:43 +02:00
Mojca Lorber 7ca62a16bb fix hound 2017-05-09 14:55:23 +02:00
Mojca Lorber e1475fbfef fix bug with avatar in system log 2017-05-09 14:40:02 +02:00
zmagod 2d69896897 fixes pdf export and image size [fixes SCI-1247] 2017-05-09 13:59:59 +02:00
zmagod df13478186 fix samples bug [SCI-1241] 2017-05-09 11:25:00 +02:00
Zmago Devetak 4b816f5322 Merge pull request #568 from ZmagoD/zd_SCI_1119 
Add images to fields with rich text formatting
 2017-05-08 13:06:58 +02:00
zmagod d6f303581f refactor 2017-05-08 12:56:33 +02:00
Zmago Devetak e47bf8f013 Merge pull request #582 from ZmagoD/zd_SCI_1051 
fix reports pdf for user annotation [SCI-1051]
 2017-05-08 10:24:40 +02:00
zmagod b22350136f adds label to step in report [fixes SCI-488] 2017-05-05 09:45:18 +02:00
zmagod 289a148332 refactor 2017-05-03 15:33:23 +02:00
zmagod 5b58824ec0 refactor 2017-05-03 15:30:08 +02:00
zmagod 1b618e88e5 fix reports pdf for user annotation [SCI-1051] 2017-05-03 10:50:43 +02:00
osboxes.org 21a39fc704 Code indentation corrected [fixes SCI-1214] 2017-04-28 10:31:14 +01:00
osboxes.org f72802f9f2 Tab Teams is highlighted when in Audit trails [fixes SCI-1214] 2017-04-26 16:31:44 +01:00
zmagod 1fefeee3d1 adds team space related methods 2017-04-25 13:44:31 +02:00
zmagod 66f43803c0 refactor, fix user annotation bug 2017-04-24 16:22:25 +02:00
zmagod 55c8c498e2 add image upload functionality to result text 2017-04-24 12:28:27 +02:00
zmagod 550f563666 working version for steps first run 2017-04-21 16:09:04 +02:00
zmagod c25df63a14 add tinymce img importer and refactor input sanitize helper 2017-04-19 09:11:52 +02:00
okriuchykhin 0fe84c4e24 Merge pull request #550 from okriuchykhin/ok_SCI_1157 
Improve speed of search [SCI-1157]
 2017-04-12 13:11:26 +02:00