340 commits

Author	SHA1	Message	Date
Jure Grabnar	1ccabf62b3	Add preview banner in external protocols	2019-06-28 01:38:33 +02:00
Jure Grabnar	d3afcbed50	Style card view on external protocols ... Closes SCI-3535	2019-06-28 00:43:05 +02:00
Jure Grabnar	0a77cedaf8	Fix sorting of external protocols and start showing results	2019-06-27 22:48:56 +02:00
Jure Grabnar	8338892fc6	Update external protocols form to include sort_by	2019-06-27 21:26:28 +02:00
Urban Rotnik	9cb4454537	New implementation for attachments creation	2019-06-27 17:02:06 +02:00
Urban Rotnik	2761079479	Add modal for import	2019-06-27 16:46:02 +02:00
Jure Grabnar	b3c3b68dc2	Add external preview to External Protocols tab ... Closes SCI-3563	2019-06-19 22:54:20 +02:00
Jure Grabnar	7adef9cc9e	Change sort buttons positions ... Closes SCI-3534	2019-06-17 12:24:13 +02:00
Jure Grabnar	d103f8ffec	Finish external protocols screen ... Closes SCI-3534	2019-06-17 12:24:12 +02:00
Jure Grabnar	0b60da9b4c	Add ExternalProtocols skeleton tab	2019-06-17 12:24:12 +02:00
aignatov-bio	5081546c78	Fix padding for protocol description (#1782)	2019-05-21 10:21:30 +02:00
Oleksii Kriuchykhin	488fc99dae	Fix protocol metadata editing in repository [SCI-3477]	2019-05-16 17:11:17 +02:00
aignatov-bio	71b3228310	Update protocol preview style [SCI-3416] (#1729) ... * Update protocol appearance	2019-05-13 10:45:12 +02:00
aignatov-bio	634b58bd6a	Various UX improvements for note section [SCI-3444] (#1742) ... * Various UX improvments for note section	2019-05-11 16:04:28 +02:00
aignatov-bio	84993ea3ef	Update protocol repository for new description format [SCI-3371] (#1689) ... * Update protocol repository for new description format * move image clone method to concerns	2019-04-24 13:34:56 +02:00
Urban Rotnik	11a7a975af	Merge branch 'features/scinote-improvements' into master-with-note-section	2019-04-23 14:50:03 +02:00
Anton Ignatov	aa2dab2014	Merge branch 'features/note-section' into master-with-note-section	2019-04-23 10:31:37 +02:00
aignatov-bio	6b45dcd475	Update eln export for new tinyMCE image format (#1680)	2019-04-19 14:44:40 +02:00
aignatov-bio	f47d0e2932	Merge pull request #1561 from aignatov-bio/ai-sci-3131-improve-image-file-upload ... Improve the image file upload into RTE input fields [SCI-3131]	2019-04-10 14:04:06 +02:00
Jure Grabnar	613843d095	Temp commit	2019-04-04 16:58:55 +02:00
Jure Grabnar	26848ecaef	Refactor step position + 1 into a method	2019-04-03 13:07:30 +02:00
Jure Grabnar	171b2eeedc	Remove the title of protocol steps when empty ... Closes SCI-3072	2019-03-25 09:36:56 +01:00
Anton Ignatov	4ec0a3c871	Update TinyMCE image loader for new fields	2019-03-22 10:52:26 +01:00
Anton Ignatov	07c2819163	refactoring tinymce image uploading	2019-03-20 14:46:54 +01:00
Matej Zrimšek	838455af0d	Fix protocols.io Date handling at import	2019-01-12 19:28:45 +01:00
Matej Zrimšek	b64df7d8cc	Fix additional Date and Time display formats	2019-01-08 06:29:37 +01:00
Alex Kriuchykhin	20e2cbf0ca	Merge pull request #1391 from okriuchykhin/ok_SCI_2880 ... Fix smart annotations rendering issues [SCI-2880]	2018-11-28 09:47:20 +01:00
Alex Kriuchykhin	d475197e65	Merge pull request #1396 from okriuchykhin/ok_SCI_2882 ... Fix handsontable initialization [SCI-2882]	2018-11-26 15:19:23 +01:00
Jure Grabnar	7812f70c2f	Merge pull request #1393 from jbargu/jg_2790_protocolsio_fix ... Protocols - import from protocols.io doesn't work	2018-11-26 14:56:25 +01:00
Oleksii Kriuchykhin	2e00f1546a	Fix handsontable initialization [SCI-2882]	2018-11-26 14:11:46 +01:00
Jure Grabnar	0086e4dcf3	Catch some of templates error when import protocols.io	2018-11-26 13:43:05 +01:00
Jure Grabnar	1c7a051551	Catch all errors on PIO import and show message	2018-11-23 20:47:48 +01:00
Jure Grabnar	2834edb286	Add command/subprotocol/safety for PIO	2018-11-23 20:13:34 +01:00
Jure Grabnar	c00b08b101	Add sw_package and dataset component for PIO	2018-11-23 19:44:10 +01:00
Jure Grabnar	2c8a7f8eca	Add last_modified evaluation for PIO import	2018-11-23 17:51:47 +01:00
Jure Grabnar	87d5e5029a	Fix publish_date in PIO import	2018-11-23 17:37:26 +01:00
Jure Grabnar	76c2da4bae	Add uniq tables	2018-11-23 16:30:29 +01:00
Oleksii Kriuchykhin	b926cadba4	Fix smartannotations rendering issues [SCI-2880]	2018-11-23 15:07:08 +01:00
Oleksii Kriuchykhin	380a96dcce	Add caching for step and result fragments [SCI-2830]	2018-11-14 11:57:53 +01:00
Zanz2	0ed62b7375	refactored according to PR review	2018-08-21 11:35:22 +02:00
Zanz2	dfcaa40f1a	Merge branch 'master' into zz_refactor_icons_sci_2445_v2	2018-08-14 13:33:43 +02:00
Zanz2	45a4c1c598	changed the icons as per last comment in jira issue	2018-08-14 13:26:48 +02:00
Oleksii Kriuchykhin	38c36ab798	Fix modals handling with Turbolinks [SCI-2253]	2018-08-02 11:25:14 +02:00
Oleksii Kriuchykhin	b2bd1cb849	Upgrade to Turbolinks 5 [SCI-2253]	2018-07-27 17:26:46 +02:00
Oleksii Kriuchykhin	6669beaf0e	Change icons throughout the rest of application [SCI-2445]	2018-07-27 15:27:08 +02:00
Oleksii Kriuchykhin	a169639b3c	Fix uploaded file max size validation in JS [SCI-2590]	2018-07-05 15:23:26 +02:00
zmagod	db1944cc90	move maximum file size limit to an ENV variable [fixes SCI-2415]	2018-06-19 14:15:14 +02:00
mlorb	f02363dfce	fix error if user is not assigned to any teams	2018-05-25 17:14:22 +02:00
mlorb	c5e62207eb	fix bug with protocol preview does not open on protocols containing files	2018-05-24 11:51:27 +02:00
mlorb	c4ecfc4d38	Change icons throughout sciNote - navigation, project, task cards	2018-05-22 16:55:58 +02:00
mlorb	ed27a7a62a	some extra restyling/unifying off app	2018-05-11 18:02:17 +02:00
mlorb	7df40e56c7	UI/UX restyle - fixes throughout application part one	2018-05-08 16:33:42 +02:00
mlorb	88d5ba369d	Merge branch 'ux-release-1' into ml-sci-2244	2018-04-26 14:07:03 +02:00
Luka Murn	cb6fe50832	Merge branch 'master' into ux-release-1 ... Conflicts: app/assets/javascripts/repositories/index.js	2018-04-26 11:38:54 +02:00
mlorb	9e11f3b220	update buttons positions and wording throughout app	2018-04-25 13:57:12 +02:00
mlorb	c08d72be36	remove breadcrumbs throughout application	2018-04-17 17:00:04 +02:00
zmagod	233e73c709	adds asset preview link to repository row modal and to table row item [fixes SCI-2110]	2018-04-10 17:06:53 +02:00
Zanz2	cff2f933a0	removed byebug :D	2018-04-04 15:19:00 +02:00
Zanz2	ec743a7420	fixed the issue	2018-04-04 15:16:31 +02:00
Oleksii Kriuchykhin	3b7977ee3b	Merge latest changes from ux-release-1 [SCI-2217]	2018-04-04 14:20:34 +02:00
Zanz2	1606982966	found a hackish fix by doing a manual ajax call and some other things with jquery	2018-04-02 19:56:25 +02:00
Oleksii Kriuchykhin	cc5d8550b1	Refactor file preview modal [SCI-2217]	2018-03-30 11:50:28 +02:00
mlorb	4bf9369bc5	refactor buttons	2018-03-29 13:58:14 +02:00
zmagod	c46da5cc67	fixes import protocol bug for guest user [fixes SCI-2197]	2018-03-19 16:10:28 +01:00
mz3944	bb21f6543c	Merge pull request #1004 from mz3944/mz-SCI-2011 ... Wrapping up the permissions [SCI-2011]	2018-03-06 07:10:40 +01:00
Zanz2	c5728c4018	Merge branch 'master' into null_step_crash_sci2043	2018-03-05 16:37:24 +01:00
Zanz2	5c93bd9676	Tables now have fixed 200 px height, which solves various issues and the scrollbar clipping to the bottom	2018-02-16 14:14:51 +01:00
Zanz2	673901fb01	Merge pull request #984 from Zanz2/yellow_flashv3_SCI1834 ... Fixed tables getting cut when certain attributes are at max length [SCI-1834]	2018-02-16 12:52:51 +01:00
Matej Zrimšek	5bda53eebf	Overall refactoring of all canaid permissions and code related to their calls.	2018-02-16 10:54:06 +01:00
Zanz2	b9db39f87d	removing last commit	2018-02-16 00:00:53 +01:00
Zanz2	95501eb046	saving work for later	2018-02-15 20:01:36 +01:00
Zanz2	ad8f93b57f	Merge pull request #991 from Zanz2/missplaced_authors_sci1808 ... protocols io authors are now real authors, not user that added the protocol [SCI-1808]	2018-02-15 16:53:39 +01:00
Matej Zrimšek	d6e7ef465c	Grouped remaining permissions for experiment, protocol, task, and partially step levels. [SCI-1964]	2018-02-14 14:19:22 +01:00
Zanz2	128f15f984	Merge pull request #990 from Zanz2/code_formatting_sci1822 ... Commands in protocols io steps are now properly formatted like code [SCI-1822]	2018-02-08 08:52:44 +01:00
Zanz2	49a4d9cf23	Tables now no longer have huge whitespace below them, it is now fixed 300 pixels and when its too big the table gets a scrollbar	2018-02-07 15:50:42 +01:00
Zanz2	60aa1a0953	Authors are now displayed as actual authors, not the person that added the protocol, and the created at date from protocols io is in protocol info, like it was before	2018-02-07 15:12:03 +01:00
Zanz2	a6356d2420	Fixed newline styling, now code is styled in newlines, and since \n doesnt work i change it to <br> with gsub and that allows code to be written into multiple lines	2018-02-07 14:46:25 +01:00
Zanz2	efaf5ad721	Commands now get styled like code	2018-02-07 13:51:22 +01:00
Zanz2	367eff6401	re-pushing this, this got merged into master already but i accidentally deleted it when merging two branches	2018-02-07 11:17:53 +01:00
Zanz2	dac59cf4d0	Refactored to PR, deleted unrelated things	2018-02-06 09:06:33 +01:00
Zanz2	70a972c264	Fixed pr and small oversight	2018-01-27 14:33:01 +01:00
Zanz2	2a287193b7	Merge branch 'images_not_imported_SCI1807' of https://github.com/Zanz2/scinote-web into images_fix	2018-01-27 13:50:35 +01:00
Zanz2	e8f6dc0d24	Merge pull request #962 from Zanz2/missing_error_SCI1993 ... A red error messagge is now displayed when not selecting protocol [SCI-1993]	2018-01-26 16:00:15 +01:00
Zanz2	1d4ce42f23	fixed according to PR	2018-01-26 15:29:13 +01:00
Zanz2	98b3ddbdb0	Merge branch 'master' into images_not_imported_SCI1807	2018-01-26 15:13:40 +01:00
Zanz2	020e9ddc16	Merge branch 'images_not_imported_SCI1807' of https://github.com/Zanz2/scinote-web into images_not_imported_SCI1807	2018-01-26 11:08:47 +01:00
Zanz2	6f56f829da	Now protocols name from attached protocol is shortened based on title limit length (255 characters),also has same limitations as scinote title	2018-01-26 10:49:38 +01:00
Zanz2	fc541147c8	A red error messagge is now displayed when selecting no protocol and pressing upload on protocols io import, and after the modal is closed the messagge is gone	2018-01-25 15:54:38 +01:00
zanzdebian	8bd8c34c4d	Fixed some styling bugs that happened after the merge, its using new function now, with old style, ( the old style turns the mouse cursor into a hand when it hovers over button)	2018-01-25 13:45:35 +01:00
Zmago Devetak	1e407bd9c5	removes unneeded classes	2018-01-25 11:00:48 +01:00
Zanz2	00ac774fde	Made images now display in protocol description, before_start, warning,guidelines, manuscript_citation, and also in Step description and step expected result	2018-01-24 13:40:13 +01:00
zmagod	f8a3fca2db	Merge branch 'master' of https://github.com/biosistemika/scinote-web into decoupling	2018-01-23 11:06:33 +01:00
Zanz2	b105920d4e	Merge pull request #901 from Zanz2/code_refactor ... Protocols.io code beautification and refactoring [SCI-1929]	2018-01-12 12:34:00 +01:00
Zanz2	3c6d37ce64	Fixed according to PR review	2018-01-11 18:37:36 +01:00
mlorb	99185871c4	fix naming things	2018-01-05 15:15:50 +01:00
Zanz2	83e1b04c7a	Fixed pull request	2017-12-24 01:49:04 +01:00
Zanz2	53561ffd84	Refactored according to PR	2017-12-15 20:39:15 +01:00
mlorb	806fcbce36	refactor update protocol in repository permission	2017-12-14 14:18:16 +01:00
mlorb	e0d1ae174e	refactor read protocol in repository permission	2017-12-14 14:18:15 +01:00
mlorb	43c01b74b1	refactor create protocol permission	2017-12-14 14:18:14 +01:00
Zmago Devetak	00be4460cc	Merge pull request #806 from ZmagoD/disable_tiny_mce_asset_unless_step ... Fixes bug with embedded images [SCI-1624]	2017-12-12 09:53:24 +01:00
Zanz2	11dc3be9d4	It is now possible to scroll down preview modal	2017-12-10 01:41:21 +01:00
Zanz2	d0a9198408	Fixed the styling	2017-12-10 01:20:08 +01:00
Zanz2	fcbd956d6e	Finished code beautification	2017-12-03 01:17:49 +01:00
Zanz2	835ac6910f	Code refactor part 1	2017-12-02 00:29:47 +01:00
zmagod	7442684846	fix protocol preview, remove unneeded functions, fix copy paste tokens	2017-11-28 14:16:20 +01:00
Zanz2	bb8aef3b73	Merge pull request #893 from Zanz2/step_desc_2small_SCI-1833 ... Fixed validations lengths and added workarounds for bugs [SCI-1833]	2017-11-24 17:55:20 +01:00
Zmago Devetak	027f4a5921	Merge pull request #890 from ZmagoD/zd_SCI_1651 ... export and import RTE images	2017-11-24 16:28:28 +01:00
zmagod	d200e355ed	follow @Ducz0r 's suggestions	2017-11-24 11:45:07 +01:00
Zanz2	dc5904aed9	Fixed this jira issue and added workarounds for bugs	2017-11-24 01:45:40 +01:00
Zanz2	764e5259d1	Fixed last review, and a bug i found	2017-11-22 23:38:22 +01:00
Zanz2	f577bf93b5	Fixed pull request review	2017-11-21 19:20:15 +01:00
Zanz2	d8c809ffd0	Reviewed pull request	2017-11-20 23:19:34 +01:00
Zanz2	cf66d94d45	Reworked functions into one function, defined all protocols.io attributes as dynamic constants, applied length checking to all protocols.io attribute fields	2017-11-20 00:59:32 +01:00
Zanz2	a6009806c4	Fixed some oversights	2017-11-17 02:56:16 +01:00
Zanz2	fa25a6785b	Made the propper files and functionality for the text truncation to function	2017-11-17 02:43:32 +01:00
Zanz2	c44465817d	Added the functions and put in limitations from my validations files, changed controller name, added some locals	2017-11-16 20:03:44 +01:00
Zanz2	c3f6c2b34a	Found a bug where i forot to include protocol description in preview modal and fixed it	2017-11-14 19:46:51 +01:00
Zanz2	bc00c4a28b	Merge pull request #874 from Zanz2/supported_file_1794 ... Made button green and added .json to supported file [SCI-1794]	2017-11-14 19:12:45 +01:00
Zanz2	6b9a10ffe4	Made validations for JSON format and .txt and .json files	2017-11-14 12:02:17 +01:00
Zanz2	7ec8d7c2b2	Made button green and added .json to supported file	2017-11-14 11:46:19 +01:00
mlorb	cd6799d571	Merge pull request #866 from biosistemika/protocols-io-import ... Protocols io import	2017-11-13 11:53:28 +01:00
Zanz2	b265beb386	Merge pull request #864 from Zanz2/move_desc ... Move protocol.io protocol description to step 1 of protocols [SCI-1695]	2017-11-13 10:07:01 +01:00
Zanz2	fa2c0fe556	merging	2017-11-09 18:55:17 +01:00
Zanz2	812fa3f1d5	Hopefully this will resolve my merge problems	2017-11-09 17:42:17 +01:00
Zanz2	a40a63ae50	Made code more aesthetic	2017-11-09 15:38:06 +01:00
Zanz2	518eb09110	Deleted un needed error flash	2017-11-09 10:49:44 +01:00
Zanz2	4b837dbe9d	Forgot flash fail messagges, now added them for file too big and general error	2017-11-09 10:49:44 +01:00
Zanz2	feb686b4ac	Fixed alignement	2017-11-09 10:49:44 +01:00
Zanz2	8b247770ef	Added the success flash alert	2017-11-09 10:49:44 +01:00
Zanz2	9086cd8b6b	Jira branch code	2017-11-09 10:49:44 +01:00
Zanz2	aa03a889c7	Fixed PR review	2017-11-03 16:28:15 +01:00
Zanz2	096ee00e07	removed unnecessary html	2017-11-03 01:28:20 +01:00
Zanz2	6a4c38bbee	Fixed table elements render bugs, now renders after shown event	2017-11-03 01:04:50 +01:00
Zanz2	6fc1afe4c1	Trying to fix this messy table preview	2017-10-30 01:57:42 +01:00
Zanz2	de9a3a1d0d	Preview tables are now functional but with inline javascript , ugly styling and a few major bugs (they dont display fully until you click on them, and i dug deep on the handson table wiki and hot table wiki for issues like this, and while they exist, idk how to implement the solutions because they use angular js mostly	2017-10-28 23:57:29 +02:00
Zanz2	a167db11da	Scinote table elements code	2017-10-28 20:20:19 +02:00
Zanz2	c291caaae3	Debbuging preive hot tables	2017-10-28 16:59:36 +02:00
Zanz2	2413dc251a	Added new preview tables code	2017-10-28 02:19:22 +02:00
Zanz2	a732c8afa7	Code for protocol repository scinote table elements view	2017-10-26 17:28:27 +02:00
Zanz2	a645bcb32d	fixed oversight;Changed double quote to single	2017-10-25 17:21:05 +02:00
Zanz2	49501b3d3d	Finished review refactor	2017-10-24 19:24:53 +02:00
Zanz2	03e40017e4	Updated local	2017-10-19 19:58:18 +02:00
Zanz2	ae9ac46472	Put the two blocks of code into seperate partials	2017-10-19 00:13:35 +02:00
Zanz2	6cf775a4b1	Refactored code, made html render on preview too	2017-10-17 19:27:20 +02:00
zmagod	30d091dc65	adds label under protocols keywords input [fixes SCI-1560]	2017-10-17 14:10:56 +02:00
Zanz2	5d667f146e	Moved .js form reset and made a standalone description method	2017-10-11 17:59:09 +02:00
Zanz2	8720222ac2	Added sanitising for all input, this escapes javascript too as far as i know (sanitize_input function from sanitize helper)	2017-10-07 22:45:01 +02:00
Zanz2	183c93d21b	Refactoring to git review specifications	2017-10-07 22:13:31 +02:00
Zanz2	9655c98566	Github review refactor	2017-10-07 20:47:05 +02:00