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3919 commits

Author SHA1 Message Date
mlorb 099cc29abb fix tests 2018-05-28 09:29:46 +02:00
Luka Murn b3ae1d8fa6 Remove some dead code, make sidebar toggle animated 2018-05-27 16:24:47 +02:00
Luka Murn b86edf20a5 Remove auto-toggling of navigation sidebar depending on width 2018-05-27 15:44:15 +02:00
Luka Murn 8b527d8a5b Restyle left side menu bar so it also works with lower heights 2018-05-27 15:24:49 +02:00
Luka Murn 6e6b6803e6 Remove session-stored toggle state of navigation bar 2018-05-27 15:24:11 +02:00
Luka Murn ce4883522a
Merge pull request #1171 from biosistemika/lm-change-login-btn-to-primary 
Change login button color to green
 2018-05-25 17:15:57 +02:00
Luka Murn 0fc278a74c
Merge pull request #1169 from biosistemika/lm-remove-report-sidebar-file 
Delete _report_sidebar.html.erb
 2018-05-25 17:15:27 +02:00
mlorb f02363dfce fix error if user is not assigned to any teams 2018-05-25 17:14:22 +02:00
Luka Murn 23d8dc0b31
Change login button color to green 
What it says, change it to `btn-primary`.
 2018-05-25 17:05:00 +02:00
zmagod 6512970b9c adds flash_message div in manage repository column page 2018-05-25 14:36:15 +02:00
zmagod c683cfdbd7 triggers the delayed job in the controller action, fixes smart annotations 2018-05-25 11:41:43 +02:00
Luka Murn c76b926387
Delete _report_sidebar.html.erb 
This file is no longer needed from my research.
 2018-05-25 11:04:05 +02:00
Luka Murn fe3ddb7c65 Update code so it works 2018-05-25 08:50:27 +02:00
Oleksii Kriuchykhin 46d6accf78 Fix search in repositories [SCI-2428] 2018-05-24 17:14:40 +02:00
Oleksii Kriuchykhin b019ab8f61 Fix WOPI controller to support repositories [SCI-2342] 2018-05-24 16:51:25 +02:00
zmagod 10351bbf83 fixes tast description/due-date modal [fixes SCI-2433] 2018-05-24 16:44:10 +02:00
Zmago Devetak 280a926554
Merge pull request #1159 from ZmagoD/zd_SCI_2372 
adds data-hook in save_PDF_to_inventory modal [fixes SCI-2372]
 2018-05-24 16:05:56 +02:00
zmagod 06f1daf7a9 rename data-hook 2018-05-24 16:02:56 +02:00
zmagod bbbe06e491 fixes reports index for guest users 2018-05-24 15:28:54 +02:00
zmagod 1f8db7bc49 Merge branch 'ux-release-1' of https://github.com/biosistemika/scinote-web into zd_SCI_2340 2018-05-24 15:00:59 +02:00
zmagod b13e39a0d9 adds discard gem, move deletion of repositories in a rake task to run in background worker [fixes SCI-2448] 2018-05-24 14:39:25 +02:00
Luka Murn c9f3de9f27 Improve toggle 2018-05-24 13:39:04 +02:00
mlorb c5e62207eb fix bug with protocol preview does not open on protocols containing files 2018-05-24 11:51:27 +02:00
mlorb f972676f8d
Merge pull request #1158 from Ducz0r/lm-sci-2416-fix 
Update software with new logo & new brand [SCI-2416]
 2018-05-23 15:47:17 +02:00
mlorb 3368e3b963
Merge branch 'ux-release-1' into ml-sci-2271 2018-05-23 14:06:54 +02:00
mlorb 2bb2f8d193
Merge pull request #1161 from mlorb/ml-sci-2350 
move the open/close arrow to the bottom of left menu [SCI-2350]
 2018-05-23 14:01:12 +02:00
mlorb 00657a78a5
Merge pull request #1162 from mlorb/ml-sci-2440-v2 
fix toggle button on inventory page [SCI-2440]
 2018-05-23 14:01:02 +02:00
okriuchykhin 7b08529e39
Merge pull request #1156 from okriuchykhin/ok_SCI_2342 
Enable editing office online files in inventories [SCI-2342]
 2018-05-23 12:59:12 +02:00
okriuchykhin f61f069c95
Merge pull request #1157 from okriuchykhin/ok_SCI_2432 
Init selectpicker for move workflow to another experiment modal [SCI-2432]
 2018-05-23 12:58:58 +02:00
mlorb 5e689f6b4d fix toggle button on inventory page 2018-05-23 11:20:42 +02:00
mlorb 79f1a1c0ad fix padding and change label colors 2018-05-23 11:13:28 +02:00
mlorb 7b5ec4ae3f move the open/close arrow to the bottom of left menu 2018-05-23 09:44:46 +02:00
mlorb c4ecfc4d38 Change icons throughout sciNote - navigation, project, task cards 2018-05-22 16:55:58 +02:00
zmagod e97a98f189 adds data-hook in save_PDF_to_inventory modal [fixes SCI-2372] 2018-05-22 14:18:40 +02:00
Luka Murn 31a1641b42
Merge pull request #1155 from Ducz0r/lm-sci-2436-fix 
Update new repository row code so file columns work again [SCI-2436]
 2018-05-22 09:27:32 +02:00
mlorb e3fc0237c1
Merge pull request #1153 from mlorb/ml-sci-2440 
Final button colour changes [SCI-2440]
 2018-05-21 16:29:04 +02:00
Oleksii Kriuchykhin 39b74d6f8a Init selectpicker for move workflow to another experiment modal [SCI-2432] 2018-05-21 16:12:39 +02:00
Oleksii Kriuchykhin 5c41527b92 Enable editing office online files in inventories [SCI-2342] 2018-05-21 15:48:48 +02:00
Luka Murn 69d1f0511f Rename sciNote -> SciNote (app/ folder) 2018-05-21 15:19:11 +02:00
Luka Murn cea18a44d5 Rename sciNote -> SciNote (app/javascript folder) 2018-05-21 15:18:30 +02:00
Luka Murn 6135081a71 Update new repository row code so file columns work again 
Also fix backend code a bit (so update & create of repository rows
are more similar in their behavior), and fix line in JS:
_initSelectPicker() was called a reduntant amount of times when
editing repository row.

Closes SCI-2436.
 2018-05-21 14:46:30 +02:00
zmagod ba2aafae39 fix access to public reports [fixes SCI-2340] 2018-05-21 14:45:18 +02:00
Zmago Devetak 2ac04ee476
Merge pull request #1150 from ZmagoD/zd_SCI_2426 
migrations that fixes the bug with smart annotations [fixes SCI-2426]
 2018-05-21 14:15:47 +02:00
Zmago Devetak 67127b4d89
Merge pull request #1151 from ZmagoD/zd_SCI_2344_v2 
shorten project name [fixes SCI-2344]
 2018-05-21 14:15:24 +02:00
Luka Murn 91673afbf3
Merge pull request #1149 from Ducz0r/lm-remove-unnecessary-save-on-notifications 
Remove unnecessary save on notifications
 2018-05-21 13:53:23 +02:00
okriuchykhin 6dbb5bc583
Merge pull request #1152 from okriuchykhin/ok_SCI_2403 
Change remove file button appearence [SCI-2403]
 2018-05-18 17:34:56 +02:00
mlorb 0fccc71fc3 fix load protocol wording and UI-style 2018-05-18 16:57:18 +02:00
mlorb c2cf52bb34 add another toggle button 2018-05-18 16:34:01 +02:00
mlorb 81392362ac Final button colour changes 2018-05-18 16:24:24 +02:00
Oleksii Kriuchykhin b79b0b79cf Change remove file button appearence [SCI-2403] 2018-05-18 14:51:45 +02:00
zmagod 5514683f96 shorten project name [fixes SCI-2344] 2018-05-18 14:12:12 +02:00
zmagod b8098093ee migrations that fixes the bug with smart annotations [fixes SCI-2426] 2018-05-18 13:57:52 +02:00
Luka Murn 5e90ae7383 Remove uneccesary save when setting notification settings on user 
These methods should behave as the rest of setters on
ActiveRecords, ergo setting the model state, but not saving it.

The save is called at the end of the action inside the controller
anyway, so this save is redundant.
 2018-05-18 13:43:04 +02:00
mlorb 876717e355 add pointer cursor to arrow 2018-05-18 13:34:52 +02:00
mlorb 64cbddb9a0 UI/UX restyle - update colours for navigation 2018-05-18 10:41:32 +02:00
Zmago Devetak c3d247faae
Merge pull request #1128 from ZmagoD/zd_SCI_2331 
adds deface hook in support dropdown [fixes SCI-2331]
 2018-05-18 09:31:02 +02:00
zmagod 8a99d35a8d removes datatables.noSearchHidden plugin 2018-05-18 09:24:36 +02:00
zmagod cf4c33bf92 Merge branch 'ux-release-1' of https://github.com/biosistemika/scinote-web into zd_SCI_2371 2018-05-17 15:22:43 +02:00
zmagod 38b0cb742c removes empty space 2018-05-17 15:21:45 +02:00
mlorb 7bda68b9f4
Merge pull request #1146 from mlorb/ml-sci-2336-v3 
Add locales [SCI-2336]
 2018-05-17 13:29:47 +02:00
zmagod e019767e90 refactor save_pdf_to_inventory_item service 2018-05-17 13:17:19 +02:00
zmagod b125863baf Merge branch 'ux-release-1' of https://github.com/biosistemika/scinote-web into zd_SCI_2371 2018-05-17 11:25:33 +02:00
zmagod ca0c8cbb71 fixes typos, fixes pdf rendering 2018-05-17 11:21:34 +02:00
mlorb 933a98c1f6 fix smart anotation color 2018-05-17 11:01:15 +02:00
Zmago Devetak 5184170a90
Merge pull request #1147 from ZmagoD/zd_SCI_2399 
fixes ajax error in repositories [fixes SCI-2399]
 2018-05-16 20:34:56 +02:00
Zmago Devetak f73bd18989
Merge pull request #1145 from ZmagoD/zd_SCI_2407 
fixes column name in columns visibility dropdown tooltip [fixes SCI-2…
 2018-05-16 20:34:40 +02:00
zmagod 87369ae16b fixes ajax error in repositories [fixes SCI-2399] 2018-05-16 15:08:50 +02:00
okriuchykhin e9d6b26ec6
Merge pull request #1141 from okriuchykhin/ok_SCI_2403 
Add clear file selector button to repository edit [SCI-2403]
 2018-05-16 14:55:53 +02:00
zmagod b1b259fdbe fixes column name in columns visibility dropdown tooltip [fixes SCI-2407] 2018-05-16 14:37:58 +02:00
mlorb 06ce285ae2 add locales 2018-05-16 14:32:15 +02:00
Zmago Devetak 8a92f1a499
Merge pull request #1127 from ZmagoD/zd_SCI_2307_v3 
Adds custom method that generates smart annotations name for repository
 2018-05-16 13:23:25 +02:00
Zmago Devetak 9d2303c777
Merge pull request #1115 from ZmagoD/zd_SCI_2321 
fixes images preview in repository/library [fixes SCI-2321]
 2018-05-16 12:05:33 +02:00
zmagod 98baa77846 fixes cursor icon 2018-05-16 12:02:46 +02:00
mlorb f59ea8c7a6
Merge pull request #1137 from mlorb/ml-sci-2336-v2 
UI/UX restyle - fixes throughout application - part 2 [SCI-2336]
 2018-05-16 11:30:54 +02:00
Oleksii Kriuchykhin c8094f196c Add margin to clear button and fix case with new file in the cell [SCI-2403] 2018-05-16 11:25:43 +02:00
zmagod 7e3dbcd92f hound 2018-05-16 10:43:25 +02:00
zmagod 712a3c7ff6 fixes css, changes spinner in preview modal 2018-05-16 10:40:49 +02:00
Oleksii Kriuchykhin be5d481cdc Add clear file selector button to repository edit [SCI-2403] 2018-05-16 10:32:50 +02:00
okriuchykhin 19ed711ce2
Merge pull request #1142 from okriuchykhin/ok_SCI_2411 
Fix pagination in global search inside repositories [SCI-2411]
 2018-05-16 10:19:05 +02:00
okriuchykhin 62f0c21a79
Merge pull request #1140 from okriuchykhin/ok_SCI_2391 
Re-init file preview modal after inventory row editing [SCI-2391]
 2018-05-16 10:18:13 +02:00
okriuchykhin 3e2b455d2c
Merge pull request #1139 from okriuchykhin/ok_SCI_2385 
Fix task resore permissions [SCI-2385]
 2018-05-16 10:17:51 +02:00
okriuchykhin a7547b9775
Merge pull request #1138 from okriuchykhin/ok_SCI_2404 
Disable some validations in repository import to improve speed [SCI-2404]
 2018-05-16 10:17:10 +02:00
okriuchykhin ffddf3fd94
Merge pull request #1135 from okriuchykhin/ok_SCI_2394 
Fix editing of inventory rows with existing files [SCI-2394]
 2018-05-16 10:16:26 +02:00
Luka Murn 19e30b4e95
Merge pull request #1143 from Ducz0r/lm-sci-2320-fix 
Write tests for repository table state [SCI-2320]
 2018-05-16 09:49:00 +02:00
zmagod 4573655ec8 adds save PDF report to inventory feature [fixes SCI-2371] 2018-05-16 09:31:19 +02:00
Zmago Devetak b771149477
Merge pull request #1133 from ZmagoD/zd_SCI_2337 
fixes error message for invalid file type [fixes SCI-2337]
 2018-05-16 08:26:11 +02:00
Luka Murn 63b7b937bb Fix a bug with table order not updating properly with col deletion 2018-05-15 20:44:15 +02:00
Oleksii Kriuchykhin 0ca0884937 Fix pagination in global search inside repositories [SCI-2411] 2018-05-15 17:48:48 +02:00
mlorb cea7f5a3f7 some extra style unification 2018-05-15 17:10:31 +02:00
mlorb 5f462165b5 change font and alerts colors 2018-05-15 14:16:34 +02:00
Oleksii Kriuchykhin 95b8821cc9 Re-init file preview modal after inventory row editing [SCI-2391] 2018-05-15 12:57:36 +02:00
Oleksii Kriuchykhin 1d0536b064 Fix task resore permissions [SCI-2385] 2018-05-15 11:51:53 +02:00
Oleksii Kriuchykhin 39d594b0da Disable some validations in repository import to improve speed [SCI-2404] 2018-05-15 11:14:43 +02:00
mlorb dfe65ccaed UI/UX restyle - fixes throughout application - part 2 2018-05-14 18:33:57 +02:00
Oleksii Kriuchykhin addf4cfe5e Handle situation with smart annotations and zero inventories [SCI-2396] 2018-05-14 15:34:23 +02:00
Oleksii Kriuchykhin a92abc5995 Fix editing of inventory rows with existing files [SCI-2394] 2018-05-14 14:26:01 +02:00
mlorb f01cfc2968 fix hound 2018-05-14 12:08:45 +02:00
mlorb ed27a7a62a some extra restyling/unifying off app 2018-05-11 18:02:17 +02:00
mlorb b5649f0574
Merge branch 'ux-release-1' into ml-sci-2336-v1 2018-05-10 13:59:57 +02:00
zmagod 3db7cc437b fixes error message for invalid file type [fixes SCI-2337] 2018-05-10 13:52:01 +02:00
Luka Murn 8650edbbb9
Merge pull request #1129 from Ducz0r/lm-fix-repositories-index 
Fix merge conflict introduced in when merging master->ux-release-1
 2018-05-10 11:19:38 +02:00
okriuchykhin 3b4d9fe744
Merge pull request #1132 from okriuchykhin/ok_SCI_2301 
Move REPOSITORIES_LIMIT from constants to env variables [SCI-2301]
 2018-05-10 10:46:25 +02:00
okriuchykhin ed8237484b
Merge pull request #1131 from okriuchykhin/ok_SCI_2379 
Re-init file preview modal after column visability change [SCI-2379]
 2018-05-10 10:45:56 +02:00
zmagod e5c3fb6af2 Merge branch 'ux-release-1' of https://github.com/biosistemika/scinote-web into zd_SCI_2321 2018-05-10 10:38:56 +02:00
zmagod 4bc01c44e9 add file name to loading image 2018-05-10 10:37:48 +02:00
Zmago Devetak 0a4deeaa35
Merge pull request #1112 from ZmagoD/zd_SCI_2261 
propagate assigned repository items in workflow [fixes SCI-2261]
 2018-05-10 09:57:49 +02:00
zmagod 38869ec037 adds title on disabled download file link 2018-05-10 09:47:10 +02:00
zmagod 0fe499d4a1 adds the update action to repository records last_modified_by field when downstreaming assigned records 2018-05-10 09:04:12 +02:00
Oleksii Kriuchykhin 8ec643c54b Move REPOSITORIES_LIMIT from constants to env variables [SCI-2301] 2018-05-09 18:03:16 +02:00
Oleksii Kriuchykhin fa1fea634c Re-init file preview modal after column visability change [SCI-2379] 2018-05-09 17:41:52 +02:00
mlorb 13f9ec30b8 fix hound 2018-05-09 13:56:32 +02:00
mlorb 7df40e56c7 UI/UX restyle - fixes throughout application part one 2018-05-08 16:33:42 +02:00
Luka Murn f8295b60c9 Fix merge conflict introduced in when merging master->ux-release-1 
Bug was introduced in merge commit
cb6fe50832 and resulted in import
into inventories not working.
 2018-05-08 09:41:40 +02:00
Zmago Devetak a6275062b7
Merge pull request #1126 from ZmagoD/zd_SCI_2344 
adds new string truncation method [fixes SCI-2344]
 2018-05-07 16:30:12 +02:00
zmagod ed6098ece6 adds deface hook in support dropdown [fixes SCI-2331] 2018-05-07 13:09:33 +02:00
zmagod 3e10ff7fc5 add custom method that generates smart annotations name from repository name [fixes SCI-2307] 2018-05-04 10:44:23 +02:00
Zmago Devetak ee307886df
Merge pull request #1124 from ZmagoD/zd_SCI_2347 
fix the missing icons on task card [fixes SCI-2347]
 2018-05-04 09:34:49 +02:00
zmagod fa30278153 change dropdown lenght 2018-05-03 16:25:59 +02:00
zmagod 0177dc811b fixes per @mojca 's request 2018-05-03 16:21:29 +02:00
zmagod abbc0995f2 fix css 2018-05-03 14:51:49 +02:00
zmagod 60e5aa8716 Merge branch 'ux-release-1' of https://github.com/biosistemika/scinote-web into zd_SCI_2142_v2 2018-05-03 14:49:06 +02:00
Zmago Devetak d744f24b85
Merge pull request #1118 from ZmagoD/zd_SCI_2323 
sign_out user after 7 days [fixes SCI-2323]
 2018-05-03 14:36:44 +02:00
Zmago Devetak 19d5c687ef
remove unneeded :rememberable module 2018-05-03 14:35:59 +02:00
Zmago Devetak 9ce071693d
Merge pull request #1116 from ZmagoD/zd_SCI_2310 
parse smart annotations in repository export [fixes SCI-2310]
 2018-05-03 14:34:29 +02:00
zmagod 0b721d86b1 adds new string truncation method [fixes SCI-2344] 2018-05-03 14:24:23 +02:00
Zmago Devetak 4fe4fea4fc
Merge pull request #1122 from ZmagoD/zd_SCI_2339 
repository when sorting/searching bug fix [SCI-2339]
 2018-05-03 12:05:39 +02:00
mlorb d2c0ae241e
Merge pull request #1121 from mlorb/ml-sci-2244 
Update buttons positions and wording throughout app [SCI-2244]
 2018-05-03 11:05:15 +02:00
mlorb ca022fead7 rename inventories buttons 2018-05-03 10:39:50 +02:00
zmagod f04677600b fix the missing icons on task card [fixes SCI-2347] 2018-05-03 10:05:40 +02:00
zmagod 0584453575 fixes per @okriuchykhin 's request 2018-04-26 17:18:03 +02:00
zmagod 66b676b5ce Merge branch 'ux-release-1' of https://github.com/biosistemika/scinote-web into zd_SCI_2321 2018-04-26 17:04:36 +02:00
zmagod 0afe461962 fixes download link 2018-04-26 17:00:51 +02:00
mlorb f97477f3f0 some extra button styling 2018-04-26 15:19:05 +02:00
mlorb 763d934aa7 fix buttons again 2018-04-26 15:02:24 +02:00
zmagod e9642cadad Merge branch 'ux-release-1' of https://github.com/biosistemika/scinote-web into zd_SCI_2304 2018-04-26 14:26:30 +02:00
zmagod ca539cdce8 remove samples from search 2018-04-26 14:25:02 +02:00
zmagod 8dac887f10 Merge branch 'ux-release-1' of https://github.com/biosistemika/scinote-web into zd_SCI_2261 2018-04-26 14:18:41 +02:00
zmagod 24acd5c779 fixes per @duco 's request 2018-04-26 14:13:46 +02:00
mlorb 88d5ba369d
Merge branch 'ux-release-1' into ml-sci-2244 2018-04-26 14:07:03 +02:00
Luka Murn cb6fe50832 Merge branch 'master' into ux-release-1 
Conflicts:
	app/assets/javascripts/repositories/index.js
 2018-04-26 11:38:54 +02:00
zmagod 23f8f35a2c a shotgun surgery that fixes searching/filtering of repository_rows [fixes SCI-2339] 2018-04-26 11:05:02 +02:00
Zmago Devetak ac10f9fdb1
Merge pull request #1117 from ZmagoD/zd_SCI_2187 
remove task description info from canvas task card [fixes SCI-2187]
 2018-04-26 09:42:47 +02:00
Zmago Devetak a6b2bb0228
Merge pull request #1120 from ZmagoD/zd_SCI_2338 
add permission check to repostiory show action [fixes SCI-2338]
 2018-04-26 09:41:43 +02:00
mlorb 9e11f3b220 update buttons positions and wording throughout app 2018-04-25 13:57:12 +02:00
Luka Murn cd04596c62
Merge pull request #1111 from Ducz0r/lm-sci-2276-fix 
Update the code for repository table states so it (hopefully) causes less errors [SCI-2276]
 2018-04-25 12:37:27 +02:00
zmagod 12365b3f0f add permission check to repostiory show action [fixes SCI-2338] 2018-04-25 11:56:30 +02:00
Luka Murn bd6f97fabc Add initializer to include helpers in all assets (including .js) 2018-04-25 10:51:19 +02:00
zmagod 4d6e995481 add dismiss buttons back 2018-04-25 10:43:16 +02:00
zmagod c026044322 fixes flash message [fixes SCI-2142] 2018-04-25 07:32:49 +02:00
zmagod 796e7c9822 sign_out user after 7 days [fixes SCI-2323] 2018-04-24 15:42:31 +02:00
zmagod 3a4df069d7 remove task description info from canvas task card [fixes SCI-2187] 2018-04-24 15:11:48 +02:00
zmagod 7d26ce561c parse smart annotations in repository export [fixes SCI-2310] 2018-04-24 14:53:49 +02:00
zmagod c2d19fee52 fixes images preview in repository/library [fixes SCI-2321] 2018-04-24 13:11:55 +02:00
Zmago Devetak 1e4a975304
Merge pull request #1113 from ZmagoD/zd_SCI_2307_v2 
rename smart annotations icons [fixes SCI-2307]
 2018-04-24 10:11:30 +02:00
zmagod 503ad1ba20 removes samples from views [fixes SCI-2304] 2018-04-24 08:26:55 +02:00
Zmago Devetak 096167c125
Merge pull request #1101 from ZmagoD/zd_SCI_2124 
adds new reports index page [fixes SCI-2124]
 2018-04-23 12:42:24 +02:00
zmagod efd1e470f6 rename smart annotations icons [fixes SCI-2307] 2018-04-23 12:38:54 +02:00
zmagod 199a2a23bf fixes per @mlorb 's request 2018-04-23 12:26:21 +02:00
zmagod 824962c084 propagate assigned repository items in workflow [fixes SCI-2261] 2018-04-23 11:33:16 +02:00
Luka Murn c0da83c5de Add some additional nil guards 2018-04-20 12:31:22 +02:00
Luka Murn d023db16af Update the destroy_column action so it properly updates all states 2018-04-20 12:31:22 +02:00
Luka Murn caab0cf55c Update the ordering upon table load 2018-04-20 12:31:22 +02:00
Luka Murn 21e7e7057e Refactor all the methods into two new services 2018-04-20 12:31:22 +02:00
Luka Murn d8ca42aa0c Refactor repository_table_state and its class methods 2018-04-20 12:31:22 +02:00
Luka Murn 5e2622ecfc Change default repository state to Ruby representation 
Also remove some dead code from repositories datatables
 2018-04-20 12:31:22 +02:00
zmagod e96b690a5b removes reports link from secondary navigation, fix bug with turbolinks 2018-04-20 11:57:52 +02:00
Zmago Devetak 645e9a19d8
Merge pull request #1108 from ZmagoD/zd_SCI_2313 
fix file preview [SCI-2313]
 2018-04-20 10:38:23 +02:00
Zmago Devetak 76c4202664
Merge pull request #1110 from ZmagoD/zd_SCI_2311 
fixes controller action in manage_columns
 2018-04-20 10:36:31 +02:00
zmagod dafa29d4bf Merge branch 'ux-release-1' of https://github.com/biosistemika/scinote-web into zd_SCI_2124 2018-04-20 10:33:15 +02:00
Zmago Devetak e94f1ad6aa
Merge pull request #1109 from ZmagoD/zd_SCI_2297_v3 
add permission to column management [fixes SCI-2297]
 2018-04-20 09:57:30 +02:00
zmagod 74f23ee461 fixes controller action in manage_columns 2018-04-20 09:53:15 +02:00
mlorb 3249d5db0d
Merge pull request #1100 from mlorb/ml-sci-2303 
Update reports show page to work with new navigation [SCI-2303]
 2018-04-20 09:50:35 +02:00
zmagod 078645332b add permission to column management [fixes SCI-2297] 2018-04-20 09:34:12 +02:00
zmagod 2a5c4daa9d fix file preview [SCI-2313] 2018-04-20 09:29:08 +02:00
Zmago Devetak 487fb1fb48
Merge pull request #1106 from ZmagoD/zd_SCI_2239_v2 
Zd sci 2239 v2
 2018-04-19 18:00:19 +02:00
mlorb ab4a66756e
Merge pull request #1107 from mlorb/ml-sci-2314 
Fix file preview background [SCI-2314]
 2018-04-19 17:59:01 +02:00
Zmago Devetak 6b4d786acc
Merge pull request #1105 from ZmagoD/zd_SCI_2307 
change repository icon
 2018-04-19 17:58:48 +02:00
mlorb 72c79013de fix file preview background 2018-04-19 17:40:24 +02:00
Zmago Devetak 93fc1af12d
Merge pull request #1083 from ZmagoD/zd_SCI_2259 
set limit on maximum number of dropdown list items [fixes SCI-2259]
 2018-04-19 17:17:54 +02:00
Zmago Devetak 1290435372
Merge pull request #1086 from ZmagoD/zd_SCI_2207 
enables copying of repository items [fixes SCI-2207]
 2018-04-19 17:13:43 +02:00
mlorb ea4d3f815b add back needed code 2018-04-19 16:51:37 +02:00
mlorb d7eccac289
Merge pull request #1099 from mlorb/ml-sci-2167 
Remove breadcrumbs throughout application [SCI-2167]
 2018-04-19 16:11:37 +02:00
zmagod a948710576 fixes alert label [fixes SCI-2239] 2018-04-19 15:51:36 +02:00
zmagod bb3e1b4dcf change repository icon 2018-04-19 15:39:24 +02:00
zmagod f555e8cea4 fix error message 2018-04-19 15:32:14 +02:00
mlorb 8753df7ce3
Merge pull request #1103 from mlorb/ml-sci-2309 
Fix top navigation style [SCI-2309]
 2018-04-19 15:16:27 +02:00
mlorb 50a4ae6163
Merge pull request #1104 from mlorb/ml-sci-2312 
Fix blocked buttons edit and eye icon [SCI-2312]
 2018-04-19 15:15:25 +02:00
mlorb c149b3cc2a refactoring 2018-04-19 15:12:26 +02:00
mlorb 5f93da27f2
Merge pull request #1102 from mlorb/ml-sci-2308 
Fix screen responsiveness [SCI-2308]
 2018-04-19 14:55:49 +02:00
mlorb 56e00740c1 fix blocked buttons edit and eye icon 2018-04-19 14:40:46 +02:00
mlorb 58bdce557d
Merge pull request #1098 from mlorb/ml-sci-2306 
Fix project navigation to work with archived pages and… [SCI-2306]
 2018-04-19 14:17:32 +02:00
Zmago Devetak 540dff25e7
Merge pull request #1091 from ZmagoD/zd_SCI_2254 
adds correct preview images to files [fixes SCI-2254]
 2018-04-19 14:04:24 +02:00
zmagod ce52eb851b add validation to dropdown items 2018-04-19 14:02:42 +02:00
mlorb c1832969b4 fix top navigation style 2018-04-19 13:26:10 +02:00
zmagod f3af8f4524 switch current_team to repository.team 2018-04-19 13:04:16 +02:00
zmagod 66cc76f640 add view label in locales 2018-04-19 12:49:32 +02:00
zmagod c23eacfe13 fixes for_admin action/ test visible_by functlion 2018-04-19 12:41:00 +02:00
mlorb 4f0c2a8122 fix screen responsiveness 2018-04-18 17:06:47 +02:00
zmagod 9d282d1800 adds new reports index page [fixes SCI-2124] 2018-04-18 16:47:52 +02:00
mlorb 57f09029f5 return needed code 2018-04-18 16:22:36 +02:00
mlorb cc34376253 update reports show page to work with new navigation 2018-04-18 14:40:53 +02:00
mlorb c08d72be36 remove breadcrumbs throughout application 2018-04-17 17:00:04 +02:00
mlorb 600ec99c82 fix project navigation to work with archived pages and correct current team 2018-04-17 13:52:43 +02:00
mlorb 04a20ab7ec change links 2018-04-16 17:05:22 +02:00
Zmago Devetak f90589d714
Merge pull request #1095 from ZmagoD/zd_SCI_2300 
fixes archive button [fixes SCI-2300]
 2018-04-16 16:19:21 +02:00
Zmago Devetak a0f549e935
Merge pull request #1093 from ZmagoD/zd_SCI_2296 
hides the create new inventory button for non admin users [fixes SCI-…
 2018-04-16 16:18:15 +02:00
Zmago Devetak 8803a7ca15
Merge pull request #1092 from ZmagoD/zd_SCI_2297 
adds edit repository item permission to normal user [fixes SCI-2297]
 2018-04-16 16:18:05 +02:00
mlorb dceef349a4 fix bug and some refectoring 2018-04-16 14:10:49 +02:00
zmagod 9baaad25b6 add current_user to cloned created_by, last_modified_by field 2018-04-16 12:38:25 +02:00
zmagod a2d8285f35 fixes archive button but [fixes SCI-2300] 2018-04-16 09:22:10 +02:00
mlorb 2627efe402 implement file column type when editing & creating new rows in inventories DataTables 2018-04-13 17:21:17 +02:00
zmagod bef166ff30 hides the create new inventory button for non admin users [fixes SCI-2296] 2018-04-13 13:39:58 +02:00
zmagod 0adc06b1a1 adds edit repository item permission to normal user [fixes SCI-2297] 2018-04-13 13:11:29 +02:00
zmagod 4f21833373 changes per @duco 's request 2018-04-13 11:47:33 +02:00
Zmago Devetak 0815111cae
Merge pull request #1090 from ZmagoD/zd_SCI_2293 
fixes edin/destory button on repository page after redirected from co…
 2018-04-13 09:58:01 +02:00
zmagod 9812a9f160 adds correct preview images to files [fixes SCI-2254] 2018-04-13 09:43:14 +02:00
Zmago Devetak f5127bad99
Merge pull request #1088 from ZmagoD/zd_SCI_2290 
remove catched views [fixes SCI-2290]
 2018-04-13 08:24:28 +02:00
zmagod f2c314cc85 fix indentation 2018-04-12 17:12:45 +02:00
zmagod 3c5ce09bcd fixes edin/destory button on repository page after redirected from columns_management page [fixes SCI-2293] 2018-04-12 17:09:53 +02:00
Zmago Devetak 478115bbb0
Merge pull request #1082 from ZmagoD/zd_SCI_2257 
refactor update protocol keywords action [fixes SCI-2257]
 2018-04-12 16:52:04 +02:00
zmagod d084998906 remove unneeded label in destroy repository record modal [fixes SCI-2292] 2018-04-12 15:00:41 +02:00
zmagod 5f5829bbe4 fix indentation 2018-04-12 14:49:51 +02:00
zmagod 123f3b796b remove catched views [fixes SCI-2290] 2018-04-12 14:48:14 +02:00
Luka Murn fa603b54b8
Merge pull request #930 from okriuchykhin/ok_SCI_1860 
Remove tutorial [SCI-1860]
 2018-04-12 14:46:20 +02:00
Luka Murn 09c60d2468 Fixes per @Ducz0r's request 2018-04-12 14:38:22 +02:00
zmagod b4deb232c0 rename variable: not_in_repository => display_image_tag 2018-04-12 13:40:17 +02:00
Luka Murn 9bf8b5d864 Merge branch 'ok_SCI_1860' of https://github.com/okriuchykhin/scinote-web into okriuchykhin-ok_SCI_1860 
Conflicts:
	Makefile
	app/assets/javascripts/projects/index.js.erb
	app/assets/stylesheets/themes/scinote.scss
	config/locales/en.yml
 2018-04-12 13:16:46 +02:00
zmagod 6291857bbf enables copying of repository items [fixes SCI-2207] 2018-04-11 17:17:19 +02:00
zmagod 23653d1d95 refactor 2018-04-11 09:29:08 +02:00
zmagod 233e73c709 adds asset preview link to repository row modal and to table row item [fixes SCI-2110] 2018-04-10 17:06:53 +02:00
zmagod e4b49e62a3 fixes import limit 2018-04-10 15:45:51 +02:00
zmagod ea4bd8831f fixes bug with CSRF on file upload, fixes turbolink issues with remote form submition [fixes SCI-2284] 2018-04-10 13:19:53 +02:00
Zmago Devetak eca69cfc75
Merge pull request #1080 from ZmagoD/zd_SCI_2076 
add asset field preview/sort/search in repository table [fixes SCI-2076]
 2018-04-09 14:29:45 +02:00
mlorb a10f671184
Merge pull request #1081 from mlorb/ml-sci-2123 
Refactor settings into the new navigation bar [SCI-2123]
 2018-04-09 13:21:16 +02:00
zmagod b12f6f1b92 set limit on maximum number of dropdown list items [fixes SCI-2259] 2018-04-09 12:50:25 +02:00
mlorb 8a35ce5c58 add locales 2018-04-09 10:53:03 +02:00
mlorb 80fe1dd73b fix travis 2018-04-06 17:16:04 +02:00
Zmago Devetak bdb6554870
Merge pull request #1049 from ZmagoD/zd_SCI_2218_2219 
adds manage columns page
 2018-04-06 17:06:28 +02:00
zmagod 58b6eb908e fix duplications 2018-04-06 17:02:10 +02:00
zmagod 024032faff refactor update protocol keywords action [fixes SCI-2257] 2018-04-06 15:41:50 +02:00
mlorb 70dfe66b2d refactoring 2018-04-06 14:20:40 +02:00
zmagod cf7761daaa Merge branch 'ux-release-1' of https://github.com/biosistemika/scinote-web into ok_SCI_2223 2018-04-06 12:56:39 +02:00
zmagod b51ad84ee5 add asset field preview/sort/search in repository table [fixes SCI-2076] 2018-04-06 12:03:39 +02:00
Zmago Devetak e30b2261a8
Merge pull request #1077 from ZmagoD/zd_SCI_2279 
fixes tiny_mce pdf report in filesystem storage mode [fixes SCI-2279]
 2018-04-05 16:52:16 +02:00
Zmago Devetak 71531ebf12
refactor 2018-04-05 16:46:09 +02:00
mlorb b8e91e91a1 refactor settings into the new navigation bar 2018-04-05 16:30:02 +02:00
Zmago Devetak cafe042494
Merge pull request #1079 from ZmagoD/zd_SCI_2282 
fixes smart annotation avatar bug in pdf reports[fixes SCI-2282]
 2018-04-05 16:12:23 +02:00
zmagod 218f421dff fixes smart annotation avatar bug in pdf reports[fixes SCI-2282] 2018-04-05 15:31:25 +02:00
Luka Murn 386ede0400 Add special middleware for handling of Rails 5.1 WOPI errors 
Closes SCI-2266.
 2018-04-05 13:26:08 +02:00
zmagod c0cc6c293a fixes tiny_mce pdf report in filesystem storage mode [fixes SCI-2279] 2018-04-05 13:15:32 +02:00
zmagod 030ce271be fixes name validations 2018-04-05 10:47:47 +02:00
zmagod 515c95061c fixes delete column action 2018-04-05 09:56:09 +02:00
zmagod afc2a35557 move import export to dropdown 2018-04-05 09:32:34 +02:00
zmagod a8a19df06d Merge branch 'ux-release-1' of https://github.com/biosistemika/scinote-web into zd_SCI_2218_2219 2018-04-05 08:51:58 +02:00
zmagod d47337fbf3 remove destroy column modal 2018-04-05 08:51:21 +02:00
okriuchykhin e608d629c7
Merge pull request #1068 from okriuchykhin/ok_SCI_2217 
Refactor file preview modal [SCI-2217]
 2018-04-05 00:18:43 +02:00
Oleksii Kriuchykhin 9720063fb3 Fix tests [SCI-2217] 2018-04-05 00:06:11 +02:00
zmagod 525a1c15ca fixes hound 2018-04-04 16:40:07 +02:00
mlorb 58433f4218 fix merge bananas 2018-04-04 16:36:26 +02:00
zmagod 0c05c60ebf Merge branch 'ux-release-1' of https://github.com/biosistemika/scinote-web into zd_SCI_2218_2219 2018-04-04 16:06:38 +02:00
Zmago Devetak ab48e4f527
Merge pull request #1072 from ZmagoD/zd_SCI_2239 
change export model wording [fixes SCI-2239]
 2018-04-04 15:40:18 +02:00
Zmago Devetak d1f3a65279
Merge pull request #1073 from ZmagoD/zd_SCI_2206 
add ID column to repository [fixes SCI-2206]
 2018-04-04 15:39:59 +02:00
Zanz2 cff2f933a0 removed byebug :D 2018-04-04 15:19:00 +02:00
Zanz2 ec743a7420 fixed the issue 2018-04-04 15:16:31 +02:00
zmagod 6e255a4657 fixes failing specs 2018-04-04 14:44:32 +02:00
Oleksii Kriuchykhin 3b7977ee3b Merge latest changes from ux-release-1 [SCI-2217] 2018-04-04 14:20:34 +02:00
Oleksii Kriuchykhin 8ee98b7cf0 Update Capybara and dependencies [SCI-2217] 2018-04-04 14:13:37 +02:00
zmagod 5eb007f4d2 fixes per @mlorb 's request 2018-04-04 13:22:14 +02:00
zmagod 38b84edfb0 Merge branch 'ux-release-1' of https://github.com/biosistemika/scinote-web into zd_SCI_2139_2121 2018-04-04 12:59:41 +02:00
zmagod e630d3113f add ID column to repository [fixes SCI-2206] 2018-04-04 11:55:11 +02:00
Zanz2 4259fa44f9
Merge pull request #1069 from Zanz2/remotipart_workaround 
Remotipart workaround [SCI-2270]
 2018-04-04 11:27:30 +02:00
Zanz2 7f36ab3e5e deleted require and gemfile entry for remotipart 2018-04-04 11:12:39 +02:00
Zmago Devetak 685255afbc
Merge pull request #1065 from ZmagoD/zd_SCI_2222 
refactor smart annotation parser, adds repository item to smart annot…
 2018-04-04 11:07:29 +02:00
zmagod 8a156ad91e change method name 2018-04-03 13:05:25 +02:00
mlorb 11c0f5e5a1
Merge pull request #1067 from mlorb/ml-sci-2243 
Style Guide - refactor colors, typography and buttons [SCI-2243]
 2018-04-03 11:30:02 +02:00
zmagod 3d5137b56f change export model wording [fixes SCI-2239] 2018-04-03 11:22:23 +02:00
mlorb e5e92eb215 fix the rest of the constants 2018-04-03 10:28:39 +02:00
zmagod 7dfec94ffc remove samples from smart annotations 2018-04-03 09:43:12 +02:00
Oleksii Kriuchykhin d8d2d75631 Fix repository rows permissions [SCI-2265] 2018-04-02 20:48:44 +02:00
Oleksii Kriuchykhin 51860652c1 Refactor smart annotations modal [SCI-2223] 2018-04-02 20:38:56 +02:00
Zanz2 2fab3e4caa
Overlooked a small change #2 2018-04-02 20:05:06 +02:00
Zanz2 25619e5e01
Overlooked a small change 2018-04-02 20:02:59 +02:00
Zanz2 1606982966 found a hackish fix by doing a manual ajax call and some other things with jquery 2018-04-02 19:56:25 +02:00
Oleksii Kriuchykhin b7c31d704f Merge branch 'zd_SCI_2222' of git://github.com/ZmagoD/scinote-web into ZmagoD-zd_SCI_2222 2018-04-01 11:10:18 +02:00
mlorb 6a20c37449 fix travis againnnnn 2018-03-30 17:16:18 +02:00
Oleksii Kriuchykhin f656ad1561 Fix fa icons [SCI-2217] 2018-03-30 17:03:44 +02:00
mlorb 5f0d33d75e fix travis again 2018-03-30 16:47:23 +02:00
Zmago Devetak f5f6fa4a4f
Merge pull request #1066 from ZmagoD/zd_SCI_2235 
updated repository import modal html [fixes SCI-2235]
 2018-03-30 14:32:53 +02:00
okriuchykhin a6d45fea0a
Merge pull request #1059 from okriuchykhin/ok_SCI_2205 
Add repository name to record info modal [SCI-2205]
 2018-03-30 14:02:53 +02:00
Oleksii Kriuchykhin cc855cda86 Fix translations [SCI-2205] 2018-03-30 12:48:34 +02:00
okriuchykhin 5e0cf58bc5
Merge pull request #1058 from okriuchykhin/ok_SCI_2111 
Implement search in file repository cells and improve performance [SCI-2111]
 2018-03-30 12:39:47 +02:00
Oleksii Kriuchykhin cc5d8550b1 Refactor file preview modal [SCI-2217] 2018-03-30 11:50:28 +02:00
mlorb 10b5e1de84 refactor typography 2018-03-30 09:54:57 +02:00
zmagod 802e917e69 updated repository import modal html [fixes SCI-2235] 2018-03-30 09:47:27 +02:00
zmagod fd88104fe2 adds manage repository link in repository actions dropdown 2018-03-29 17:10:57 +02:00
zmagod 56b0900619 Merge branch 'ux-release-1' of https://github.com/biosistemika/scinote-web into zd_SCI_2218_2219 2018-03-29 16:42:10 +02:00
zmagod 01a548e8b3 fix hound 2018-03-29 16:11:21 +02:00
zmagod 659a088058 refactor smart annotation parser, adds repository item to smart annotation parser [fixes SCI-2222] 2018-03-29 15:55:26 +02:00
mlorb 4bf9369bc5 refactor buttons 2018-03-29 13:58:14 +02:00
okriuchykhin 31c68ab4bc
Merge pull request #1062 from okriuchykhin/ok_SCI_2201 
Rescale Linkedin buttons [SCI-2201]
 2018-03-28 15:23:05 +02:00
zmagod 7c1390ece2 implement sidebar toggle [fixes SCI-2232] 2018-03-28 14:12:11 +02:00
mlorb 22afa61b11 refactor colors 2018-03-28 13:54:01 +02:00
Luka Murn c07dc98cc8 Fix Office Online editing of files [SCI-2264] 
Office Online files could not be edited. I believe the reason
was that in Rails 5.1, `render nothing: true` was removed. So
I replaced this in `wopi_controller` with `render body: nil`.
Hopefully this will do the trick.

Closes SCI-2264.
 2018-03-28 13:22:30 +02:00
okriuchykhin 13fed0411b
Merge pull request #1063 from biosistemika/release-1.12.11 
merge release 1.12.11 branch to master
 2018-03-27 16:19:57 +02:00
Oleksii Kriuchykhin 1ed0b16d12 Rescale Linkedin buttons [SCI-2201] 2018-03-27 15:00:28 +02:00
Oleksii Kriuchykhin 31aed55ffc Disable turbolinks on tasks navigation [SCI-2251] 2018-03-26 17:55:51 +02:00
okriuchykhin 145f49de2d
Revert "Update turbolinks and fix repository table init [SCI-2251]" 2018-03-26 17:38:48 +02:00
Oleksii Kriuchykhin fac5875cfd Add repository name to record info modal [SCI-2205] 2018-03-26 16:18:09 +02:00
okriuchykhin 784a4723cc
Merge pull request #1056 from okriuchykhin/ok_SCI_2251 
Update turbolinks and fix repository table init [SCI-2251]
 2018-03-26 14:23:30 +02:00
okriuchykhin fc06f8c60b
Merge pull request #1055 from okriuchykhin/ok_SCI_2250 
Skip asset if file is missing in protocol export [SCI-2250]
 2018-03-26 14:19:49 +02:00
Oleksii Kriuchykhin 5dc01a3d42 Fix code style [SCI-2251] 2018-03-26 13:59:45 +02:00
Oleksii Kriuchykhin 07070df1b4 Fix users profile edit form [SCI-2251] 2018-03-26 13:47:12 +02:00
okriuchykhin b1fcdb7474
Merge pull request #1057 from okriuchykhin/ok_SCI_2249 
Fix sample assign permissions [SCI-2249]
 2018-03-26 13:24:38 +02:00
Oleksii Kriuchykhin e42fc3117b Implement search in file repository cells and improve performance [SCI-2111] 2018-03-26 13:19:09 +02:00
zmagod 8f09e1f7a4 Merge branch 'ux-release-1' of https://github.com/biosistemika/scinote-web into zd_SCI_2139_2121 2018-03-26 13:08:31 +02:00
Zmago Devetak 2310439088
Merge pull request #1045 from ZmagoD/zd_SCI_2197 
fixes import protocol bug for guest user [fixes SCI-2197]
 2018-03-26 13:08:01 +02:00
zmagod c61efb0624 rename before_acton hook 2018-03-26 13:07:00 +02:00
mlorb b7a14215bc
Merge pull request #1050 from mlorb/ml-sci-2120-v2 
Refactor project navigation [SCI-2120]
 2018-03-26 12:56:19 +02:00
mlorb 0092be08cc refactor links 2018-03-26 12:11:59 +02:00
zmagod 3efe06a410 Merge branch 'ux-release-1' of https://github.com/biosistemika/scinote-web into zd_SCI_2139_2121 2018-03-26 12:02:24 +02:00
zmagod 9e1f285c9e adds missing labels [fixes SCI-2219] 2018-03-26 11:28:14 +02:00
mlorb 1797afa718
Merge branch 'ux-release-1' into ml-sci-2238 2018-03-26 10:44:43 +02:00
mlorb 70e0d8bd1d
Merge pull request #1052 from mlorb/ml-sci-2125 
Implement new Help dropup in navigation [SCI-2125]
 2018-03-26 09:22:39 +02:00
Oleksii Kriuchykhin aa69624f9f Fix sample assign permissions [SCI-2249] 2018-03-25 20:10:32 +02:00
Oleksii Kriuchykhin 83c7539156 Update turbolinks and fix repository table init [SCI-2251] 2018-03-25 19:44:58 +02:00
Oleksii Kriuchykhin ecd3c73772 Skip asset if file is missing in protocol export [SCI-2250] 2018-03-25 13:36:24 +02:00
mlorb 83741358d1 fix locales 2018-03-23 16:19:06 +01:00
zmagod baf69461f5 adds edit/create modal and related actions 2018-03-23 16:00:33 +01:00
mlorb eee597b315 fix naming 2018-03-23 15:56:38 +01:00
mlorb 2e81359ebb re-implement About sciNote modal 2018-03-23 15:14:49 +01:00
mlorb 5589b27883 improve message for deleting sample/report items 2018-03-23 14:39:09 +01:00
mlorb 9aa87a17e5 remove help helper 2018-03-23 14:26:53 +01:00
mlorb faaecec2ff implement new Help dropup in navigation 2018-03-23 14:08:27 +01:00
mlorb bc06542ed7 refactor project navigation 2018-03-22 11:41:33 +01:00
zmagod 3be3c00574 adds manage columns page [fixes SCI-2218] 2018-03-22 09:35:36 +01:00
Oleksii Kriuchykhin 36302ad6e8 Refactor existing columns management to control only Column visibility and order [SCI-2220] 2018-03-21 16:56:36 +01:00
zmagod 81df97f008 add library sidebar and create new library button [fixes SCI-2121] 2018-03-21 09:22:55 +01:00
zmagod 62858bc14f Merge branch 'ux-release-1' of https://github.com/biosistemika/scinote-web into zd_SCI_2139_2121 2018-03-20 14:46:11 +01:00
zmagod 1ad8c259d1 add blank page for repositories [fixes SCI-2139] 2018-03-20 14:45:57 +01:00
mlorb 35afc06cbd
Merge pull request #1038 from mlorb/ml-sci-2118 
Code left-side menu bar [SCI-2118]
 2018-03-20 14:40:55 +01:00
Zmago Devetak 75d7ace8c7
Merge pull request #1017 from ZmagoD/zd_SCI_2068 
Write server-side endpoints for custom repositories [SCI-2068]
 2018-03-20 14:30:47 +01:00
mlorb 9cf9bf94c0 fix merge conflict 2018-03-20 14:30:07 +01:00
mlorb 884eef9d07 Merge remote-tracking branch 'upstream/ux-release-1' into ml-sci-2118 2018-03-20 14:25:59 +01:00
mlorb e0926ddc3c code refactoring 2018-03-20 13:53:11 +01:00
okriuchykhin 5b1951e01e
Merge pull request #1044 from okriuchykhin/ok_SCI_2117 
Remove Power Up button [SCI-2117]
 2018-03-20 09:53:17 +01:00
zmagod 064bd88584 fix assigned query 2018-03-19 17:49:09 +01:00
okriuchykhin d906baff61
Merge pull request #1039 from okriuchykhin/ok_SCI_1697 
Improve connections between repository models [SCI-1697]
 2018-03-19 16:42:55 +01:00
Zmago Devetak 8349b08575
Merge pull request #1012 from ZmagoD/zd_SCI_2024_fix_custom_repositores_import 
Fix custom repositories import so it supports "list of values" custom column types  [fixes SCI-2024]
 2018-03-19 16:41:11 +01:00
okriuchykhin 2356b78044
Merge pull request #1042 from okriuchykhin/ok_SCI_2201 
Use larger LinkedIn sign-in button [SCI-2201]
 2018-03-19 16:23:22 +01:00
zmagod c46da5cc67 fixes import protocol bug for guest user [fixes SCI-2197] 2018-03-19 16:10:28 +01:00
Oleksii Kriuchykhin acbd40e0d1 Remove Power Up button [SCI-2117] 2018-03-18 22:12:29 +01:00
Oleksii Kriuchykhin a105e61d48 Remove tutorial [SCI-1860] 2018-03-18 13:18:05 +01:00
Oleksii Kriuchykhin 37f675b32a Use larger LinkedIn sign-in button [SCI-2201] 2018-03-18 12:18:33 +01:00
zmagod 3131ed0948 adds permission check to archived project actions dropdown [fixes SCI-2194] 2018-03-16 17:30:49 +01:00
zmagod a9dfcd9681 refactor 2018-03-16 16:38:59 +01:00
zmagod 311b2dac5a Merge branch 'samples_to_repositories_table_migration' of https://github.com/biosistemika/scinote-web into zd_SCI_2142 2018-03-16 16:21:47 +01:00
zmagod 86a8afd907 refactor 2018-03-16 15:56:12 +01:00
zmagod ee03115361 Merge branch 'samples_to_repositories_table_migration' of https://github.com/biosistemika/scinote-web into zd_SCI_2095 2018-03-16 15:32:40 +01:00
Oleksii Kriuchykhin 9371d77762 Improve connections between repository models [SCI-1697] 2018-03-16 13:12:33 +01:00
zmagod fad4001273 fix edit row action 2018-03-16 12:27:19 +01:00
Oleksii Kriuchykhin 27a605d974 Fix failing test [SCI-2148][SCI-2149] 2018-03-16 11:05:38 +01:00
zmagod 1cdba5e0d3 Merge branch 'samples_to_repositories_table_migration' of https://github.com/biosistemika/scinote-web into zd_SCI_2068 2018-03-16 11:05:16 +01:00
zmagod c2eb6d6900 fixes hound adds specs to repository_list_items controller 2018-03-16 10:53:05 +01:00
Oleksii Kriuchykhin f3385adb06 Merge branch 'master' into ok_SCI_2148 2018-03-16 10:21:02 +01:00
zmagod d69754af04 implement search on list items dropdown, update, create actions [fixes SCI-2070] 2018-03-15 15:43:16 +01:00
mlorb 9fd845c478 fix failing cucumber tests 2018-03-14 17:55:04 +01:00
mlorb 9de998e85c code left-side menu bar 2018-03-14 14:33:34 +01:00
Zanz2 bf34d82791 refactored to PR 2018-03-13 17:42:26 +01:00
zmagod a6a25bbe08 add floating alert message 2018-03-13 16:33:48 +01:00
zmagod b67a54e2d1 Merge branch 'samples_to_repositories_table_migration' of https://github.com/biosistemika/scinote-web into zd_SCI_2024_fix_custom_repositores_import 2018-03-13 15:25:57 +01:00
Zmago Devetak f778415321
Merge pull request #1014 from ZmagoD/zd_SCI_2025 
Fix custom repositories export so it supports "list of values" custom column types [fixes SCI-2025]
 2018-03-13 15:20:46 +01:00
Zmago Devetak d7679dcb99
Merge pull request #1032 from ZmagoD/zd_SCI_2141 
refactor global activities in separate page [fixes SCI-2141]
 2018-03-13 15:20:14 +01:00
zmagod 5b56f3dbd6 fix hound 2018-03-13 14:47:35 +01:00
okriuchykhin 503617b42c
Merge branch 'samples_to_repositories_table_migration' into zd_SCI_2025 2018-03-13 14:44:20 +01:00
okriuchykhin f14931f6a8
Update with latest changes on branch 2018-03-13 14:37:12 +01:00
zmagod dd2f7dd417 Merge branch 'master' of https://github.com/biosistemika/scinote-web into samples_to_repositories_table_migration 2018-03-13 13:24:36 +01:00
Oleksii Kriuchykhin 269f7d74fa Add explicit ordering to samples_tables [SCI-2148][SCI-2149] 2018-03-13 13:16:34 +01:00
okriuchykhin 262c21d145
Merge pull request #1036 from okriuchykhin/ok_SCI_2078 
Implement importable selector for repository columns [SCI-2078]
 2018-03-13 13:14:53 +01:00
okriuchykhin dfb0d923b5
Merge pull request #1030 from okriuchykhin/ok_SCI_2016 
Add annotations migrations and optimize queries [SCI-2016]
 2018-03-13 13:07:31 +01:00
Oleksii Kriuchykhin be1ead22e0 Implement importable selector for repository columns [SCI-2078] 2018-03-13 11:36:05 +01:00
zmagod 51af74071c remove comments and activity modal 2018-03-13 10:52:53 +01:00
Oleksii Kriuchykhin 21c07371c9 Fix repository export to support file columns [SCI-2079] 2018-03-13 10:40:27 +01:00
Oleksii Kriuchykhin f5ecbecaf3 Fix bugs [SCI-1849] 2018-03-12 17:00:44 +01:00
zmagod 8fe173e831 re-structure top navigation bar 2018-03-12 16:27:35 +01:00
mlorb 3b9ad2f86f
Merge pull request #1028 from mlorb/ml-sci-2144 
Add file custom column type to db [SCI-2144]
 2018-03-12 15:18:02 +01:00
zmagod e218cae453 refactor global activities in separate page [fixes SCI-2141] 2018-03-12 11:01:23 +01:00
mlorb 34f5c2c7ac fix validation in asset model and change formatted method in repository_asset_value model 2018-03-12 10:50:45 +01:00
Oleksii Kriuchykhin 60e3a836be Fix typo in regex [SCI-1849] 2018-03-11 22:11:12 +01:00
Oleksii Kriuchykhin ac009a29cb Add annotations migrations and optimize queries [SCI-2016] 2018-03-11 22:06:44 +01:00
Zanz2 97c01c386b pushing fix 2018-03-10 22:48:25 +01:00
Zmago Devetak d50bc5fde9
Merge pull request #998 from ZmagoD/zd_SCI_2014 
migration script for migrating samples -> custom repositories [SCI-2014]
 2018-03-09 17:19:12 +01:00
okriuchykhin e0834a57cf
Merge pull request #1027 from okriuchykhin/ok_SCI_2163 
Hide delete button for guest users in repository [SCI-2163]
 2018-03-09 17:16:58 +01:00
mlorb 64e26e1c60 add file custom column type to db 2018-03-09 17:04:54 +01:00
okriuchykhin 707d2a048f
Merge pull request #1024 from okriuchykhin/ok_SCI_2145 
Fix sample record creation [SCI-2145]
 2018-03-09 16:52:38 +01:00
okriuchykhin 7cbfa5936a
Merge pull request #1026 from okriuchykhin/ok_SCI_2148 
Add uniqueness validation for SamplesTable [SCI-2148][SCI-2149]
 2018-03-09 16:42:33 +01:00
Oleksii Kriuchykhin 853e1f7657 Fix nil case [SCI-2145] 2018-03-09 16:41:23 +01:00
Oleksii Kriuchykhin cd9260f439 Hide delete button for guest users in repository [SCI-2163] 2018-03-09 16:19:36 +01:00
zmagod 22eb4121f0 follow @okriuchykhin 's suggestions 2018-03-09 15:44:42 +01:00
Oleksii Kriuchykhin e4d974aa58 Add uniqueness validation for SamplesTable [SCI-2148][SCI-2149] 2018-03-09 15:34:06 +01:00
zmagod 0baa7a1f99 fix hound 2018-03-09 14:43:12 +01:00
zmagod 4f951f6679 adds unit specs for datatable service [fixes SCI-2068] 2018-03-09 14:22:00 +01:00
Oleksii Kriuchykhin 940469e41b Fix user management on project [SCI-2146] 2018-03-09 12:08:34 +01:00
Oleksii Kriuchykhin 804d313f90 Fix sample record creation [SCI-2145] 2018-03-09 11:52:28 +01:00
Oleksii Kriuchykhin 1765d83cd1 Refactor search to support repository list items [SCI-2108] 2018-03-09 11:05:43 +01:00
okriuchykhin 160935cde0
Merge pull request #1022 from okriuchykhin/ok_SCI_2136 
Fix manage repository permissions [SCI-2136]
 2018-03-09 10:15:24 +01:00
okriuchykhin d0d5481a29
Merge pull request #1021 from okriuchykhin/ok_SCI_2131 
Fix notification for user removal from a team [SCI-2131]
 2018-03-09 10:15:09 +01:00
zmagod 26883af386 fix assigned ordering 2018-03-08 17:36:10 +01:00
okriuchykhin a306e65093
Merge pull request #1016 from okriuchykhin/ok_SCI_2130 
Fix edit project's users modal [SCI-2130]
 2018-03-07 14:04:26 +01:00
Oleksii Kriuchykhin bd9f5c1cda Fix manage repository permissions [SCI-2136] 2018-03-07 13:41:57 +01:00
Oleksii Kriuchykhin 1082f7f93c Fix notification for user removal from a team [SCI-2131] 2018-03-07 13:20:17 +01:00
okriuchykhin cae726f5c3
Merge pull request #1020 from okriuchykhin/ok_SCI_2055 
Fix invite users link on task card [SCI-2055]
 2018-03-07 09:41:23 +01:00
okriuchykhin c0cfa6e7fe
Merge pull request #1019 from okriuchykhin/ok_SCI_2134 
Remove extra permission checks from WOPI buttons [SCI-2134][SCI-2133]
 2018-03-06 18:10:05 +01:00
Oleksii Kriuchykhin 186780e68f Fix invite users link on task card [SCI-2055] 2018-03-06 17:56:01 +01:00
Oleksii Kriuchykhin 156a639e4c Remove extra permission checks from WOPI buttons [SCI-2134][SCI-2133] 2018-03-06 17:36:40 +01:00
Oleksii Kriuchykhin b5eb821cfa Fix sample's custom column permissions [SCI-2135] 2018-03-06 16:40:25 +01:00
zmagod fb66131e29 setup endpoint for repository_rows paging/search 2018-03-06 16:32:39 +01:00
Oleksii Kriuchykhin ca66858063 Fix edit project's users modal [SCI-2130] 2018-03-06 15:49:30 +01:00
Oleksii Kriuchykhin c933030b94 Add team export/import scripts [SCI-1849] 2018-03-06 11:26:30 +01:00
mz3944 bb21f6543c
Merge pull request #1004 from mz3944/mz-SCI-2011 
Wrapping up the permissions [SCI-2011]
 2018-03-06 07:10:40 +01:00
Matej Zrimšek c5b0a6525b Some additional permission calls fixes, minor refactoring. 2018-03-06 06:56:35 +01:00
Zanz2 8f5dd3df38
Merge pull request #1003 from Zanz2/table_missing_scrollbar_sci1818 
Table missing scrollbar [SCI-1818]
 2018-03-05 17:13:06 +01:00
Zanz2 1e6f1acef5 fixed according to pr 2018-03-05 17:02:37 +01:00
Zanz2 451d14c2e9 Added 4 to constants too, then fixed line too long error 2018-03-05 16:48:18 +01:00
Zanz2 c5728c4018
Merge branch 'master' into null_step_crash_sci2043 2018-03-05 16:37:24 +01:00
Zanz2 e3e7514049 removed redundant return 2018-03-05 16:15:33 +01:00
Zanz2 554b31e0aa Added constants 2018-03-05 16:09:06 +01:00
Zanz2 bd19c89212
Merge pull request #1013 from Zanz2/step_reorder_fix 
quick fix for if previous guid is unknown format [Protocols.io import]
 2018-03-05 15:59:46 +01:00
zmagod fca01bd54f refactor repository export [fixes SCI-2025] 2018-03-05 15:54:04 +01:00
mlorb 5e44859ce0
Merge pull request #1010 from mlorb/ml-sci-1826 
Sign up with linkedIn account [SCI-1826]
 2018-03-05 13:24:36 +01:00
mlorb a19b672a83
change validation again 2018-03-05 13:12:44 +01:00
Zmago Devetak 50ccec5007
Merge pull request #1009 from ZmagoD/zd_SCI_2066 
add info modal for repository items [fixes SCI-2066]
 2018-03-05 12:49:29 +01:00
Matej Zrimšek 61d1f5374d Additionaly removed some unneeded code, related to the previous commit. 2018-03-04 15:24:43 +01:00
Matej Zrimšek fa7710fb80 Forgot to remove unneeded code form permissions after the previous refactoring. 2018-03-04 15:17:46 +01:00
Matej Zrimšek 53f75f3cd6 Minor permissions and their calls refactoring and fixing. 2018-03-04 14:49:41 +01:00
Matej Zrimšek 5724f8ed4d Minor permissions refactoring, including putting the same checks for multiple permissions before the specific ones, hence preventing further evaluation if those permissions are not met. 2018-03-04 14:19:17 +01:00
mz3944 c04a153652
Merge pull request #1005 from mz3944/mz-SCI-2064 
At adding file to task, cancel button does not respond [SCI-2064]
 2018-03-04 13:34:50 +01:00
Zanz2 ba67446eee quick fix for if previous guid is unknown format 2018-03-03 22:26:00 +01:00
Zanz2 5bcda7f6de fixed pr 2018-03-02 23:02:35 +01:00
Zanz2 350f12bdbc using dig method now 2018-03-02 22:29:51 +01:00
mlorb d19ca7fbdc
change validation 2018-03-02 16:32:46 +01:00
zmagod 4642d049fa fix hound 2018-03-02 14:16:31 +01:00
zmagod 2b55cd7090 rename variables 2018-03-02 14:14:27 +01:00
zmagod 0996745781 refactor repository import, adds RepositoryListType as an option and makes the import class more extensible [fixes SCI-2024] 2018-03-02 13:39:22 +01:00
mlorb f5949e9d10 refactor 2018-03-01 17:52:24 +01:00
Luka Murn 070450f813 Merge branch 'release-1.12.11' 
Conflicts:
	config/initializers/extends.rb
 2018-03-01 14:04:57 +01:00
zmagod 83ba412c48 remove unneeded comment 2018-03-01 11:51:39 +01:00
mlorb 08439e7f58 sign up with linkedIn account 2018-02-28 18:12:21 +01:00
zmagod 29a1073a50 refactor queries 2018-02-27 16:34:51 +01:00
zmagod e3ca782996 add info modal for repository items [fixes SCI-2066] 2018-02-27 16:21:46 +01:00
zmagod 6908368506 refactor 2018-02-27 10:43:57 +01:00
zmagod 3aa28f6d11 assign repository row to task 2018-02-27 10:40:52 +01:00
zmagod 83db7ed01d adds rake task to migrate the samples in custom repositories and tests [fixes SCI-2014] 2018-02-26 17:21:58 +01:00
Oleksii Kriuchykhin aa933ad1f4 Add extendable file types mappings for icons [PIP-46] 2018-02-26 14:23:02 +01:00
Matej Zrimšek 96a6779d55 Fixed misspelled permission call. 2018-02-22 14:08:12 +01:00
Matej Zrimšek ff9dff5c10 Fixed reports permissions check calls. Fixed Hound warnings. 2018-02-22 13:51:22 +01:00
Matej Zrimšek 1904099954 Put permissions helper methods inside utility module. 2018-02-21 20:22:13 +01:00
Zanz2 29aea1ebd2 refactored according to PR 2018-02-21 16:17:53 +01:00
mlorb 4d69636dbe
Merge pull request #1002 from mlorb/ml-sci-2031_v2 
Fix bug with load older activities button not working [SCI-2031]
 2018-02-20 13:19:20 +01:00
Zanz2 9c2a2956e3 Merge branch 'table_missing_scrollbar_sci1818' of github.com:Zanz2/scinote-web into table_missing_scrollbar_sci1818 
Merging Biosis master with branch that resizes small tables to atleast 5x5
 2018-02-19 17:40:13 +01:00
Matej Zrimšek b8b9707c06 Fixed protocol and archive permission calls, fixed result permissions; module group managing is now also allowed on newly created groups; other permission call fixes and some refactoring. 2018-02-19 14:51:14 +01:00
mlorb d2dcb765b4 fix bug with load older activities button not working 2018-02-16 15:42:10 +01:00
Zanz2 5c93bd9676 Tables now have fixed 200 px height, which solves various issues and the scrollbar clipping to the bottom 2018-02-16 14:14:51 +01:00
Zanz2 673901fb01
Merge pull request #984 from Zanz2/yellow_flashv3_SCI1834 
Fixed tables getting cut when certain attributes are at max length [SCI-1834]
 2018-02-16 12:52:51 +01:00
Matej Zrimšek 7b07e7b347 Fixed protocol in repository permissions, and refactored it a bit. 2018-02-16 12:04:11 +01:00
Matej Zrimšek 6ba226d514 Added missing '?' to the canaid permission calls that were missing it. 2018-02-16 11:12:30 +01:00
Matej Zrimšek 5bda53eebf Overall refactoring of all canaid permissions and code related to their calls. 2018-02-16 10:54:06 +01:00
Matej Zrimšek 4fe669ca9a Removed permissions helper and updated the remaining calls to its methods with the new canaid gem permissions. 2018-02-16 10:53:22 +01:00
Zanz2 b9db39f87d removing last commit 2018-02-16 00:00:53 +01:00
Zanz2 fab9180b7b fixed small oversight 2018-02-15 23:40:09 +01:00
Zanz2 c963c948a1 Fixed main issue, bad step structure now gets fixed to empty template 2018-02-15 23:28:20 +01:00
Zanz2 95501eb046 saving work for later 2018-02-15 20:01:36 +01:00
zmagod 5922aa21a8 adds fetch_all_team_samples method/spec 2018-02-15 17:38:45 +01:00
zmagod c53df21946 adds specs for sample_to_repository migration service 2018-02-15 16:56:38 +01:00
Zanz2 ad8f93b57f
Merge pull request #991 from Zanz2/missplaced_authors_sci1808 
protocols io authors are now real authors, not user that added the protocol [SCI-1808]
 2018-02-15 16:53:39 +01:00
mlorb 9797712561
Merge pull request #997 from mlorb/ml-sci-2045 
Fix bug with user getting the notification at completing the step, when notifications are switched off [SCI-2045]
 2018-02-15 14:51:40 +01:00
Zmago Devetak e0510ab448
Merge pull request #995 from ZmagoD/zd_SCI_2040 
fixed bug with assigned repository items [fixes SCI-2040]
 2018-02-15 13:05:30 +01:00
Zmago Devetak 0583979cf9
Merge pull request #993 from ZmagoD/zd_SCI_2039 
fixes errors with form id duplicates [fixes SCI-2039]
 2018-02-15 11:10:43 +01:00
zmagod 78e902f316 fixes few Hound alerts 2018-02-15 11:06:59 +01:00
zmagod e0ac8e8f91 extract helper methods in service 2018-02-15 09:36:09 +01:00
Matej Zrimšek ac5b65b121 Added some additional comments for checking if project is active in permissions. 2018-02-14 14:39:10 +01:00
Matej Zrimšek 09c5e23adf Fixed permission checks for completing step and checking step checkboxes. Disabled turbolinks for comments since it can cause issues. Minor code styling changes. 2018-02-14 14:39:10 +01:00
Matej Zrimšek d571ab2ed8 Fixed comments permissions for experiment level. 2018-02-14 14:39:10 +01:00
Matej Zrimšek 6b1fee4d30 Added/joined repository record assignment to task with sample assignmment to task. 2018-02-14 14:39:10 +01:00
Matej Zrimšek f21c794a95 Fixed permission error when accessing samples page. 2018-02-14 14:39:09 +01:00
Matej Zrimšek 4c87fb4a55 Fixed permission error when restoring task. 2018-02-14 14:39:09 +01:00
Matej Zrimšek 946f516171 Fixed permission error when moving a freshly cloned task. 2018-02-14 14:39:09 +01:00
Matej Zrimšek 68206cb591 Added missing checks for whether task/experiment/project is active for experiment level permissions. Minor code refactoring and restyling. 2018-02-14 14:39:08 +01:00
Matej Zrimšek d55734e501 Added additional permission checks for moving tasks. Added forgotten enclosing tag in a view. 2018-02-14 14:39:07 +01:00
Matej Zrimšek d7108f5a35 Fixed Hound warnings. 2018-02-14 14:39:07 +01:00
Matej Zrimšek 8ef6c8f91f Refactored remaining experiment level permissions (and everything below it). 2018-02-14 14:39:07 +01:00
Matej Zrimšek 879eda2d8f Minor experiment level permissions refactoring. 2018-02-14 14:19:22 +01:00
Matej Zrimšek 0706d16020 Readded module level archive, move, clone and manag permissions. Corrected their usage and add the permissions check in some additional places. 2018-02-14 14:19:22 +01:00
Matej Zrimšek 1182ce5da1 Fixed experiment level permission checks in the controllers. 2018-02-14 14:19:22 +01:00
Matej Zrimšek 7938c2e036 Minor code style changes. 2018-02-14 14:19:22 +01:00
Matej Zrimšek c5b798017e Minor Hound warning fixes. 2018-02-14 14:19:22 +01:00
Matej Zrimšek d6e7ef465c Grouped remaining permissions for experiment, protocol, task, and partially step levels. [SCI-1964] 2018-02-14 14:19:22 +01:00
Matej Zrimšek 854333b0e6 Grouped permissions for experiment with canaid gem (WIP). 2018-02-14 14:19:00 +01:00
Matej Zrimšek 70fdae567c Forgot to add check whether project is active for archive project permission. Added some additional comments for checking if project is active in permissions. 2018-02-14 13:16:32 +01:00
Matej Zrimšek c09ffa4043 Project permissions comments change. 2018-02-14 13:16:32 +01:00
Matej Zrimšek d058c371d4 Readded project archive permission. 2018-02-14 13:16:32 +01:00
Matej Zrimšek 900446557b Fixed mistyped permission checker. 2018-02-14 13:16:32 +01:00
Matej Zrimšek e36ec69ca9 Project level permissions refactoring (mostly names). 2018-02-14 13:16:32 +01:00
Matej Zrimšek 93536afcd5 Renamed permission 'update_project' to 'manage_project'. Some permissions fixes; added them in some places where they were missing. 2018-02-14 13:16:32 +01:00
Matej Zrimšek 13e9a2a132 Corrected some project level permissions; minor refactoring. 2018-02-14 13:16:32 +01:00
Matej Zrimšek e5799ee6dc Some permission fixes. 2018-02-14 13:16:32 +01:00
Matej Zrimšek a21343a819 Fixing and refactoring project permissions in controllers. 2018-02-14 13:16:32 +01:00
Matej Zrimšek 279da20060 Fixed Hound warnings. 2018-02-14 13:16:32 +01:00
Matej Zrimšek d423700e84 Used permissions where they were missing. 2018-02-14 13:16:32 +01:00
Matej Zrimšek 321ddc2916 Grouped existing project permissions and used 'canaid' gem. 2018-02-14 13:09:45 +01:00
mlorb 8d0ac93c80 add check to start work on next task notification if recent changes notification is switched off 2018-02-13 11:01:45 +01:00
zmagod 18eab358c7 generate custom repository when user is created [fixes SCI-2020] 2018-02-13 10:44:50 +01:00
Zmago Devetak 027297d46a
Merge pull request #985 from ZmagoD/zd_SCI_2008 
fixes bug with assets upload on task result page,
 2018-02-12 11:40:44 +01:00
okriuchykhin e7fb1bc716
Merge pull request #967 from okriuchykhin/ok_SCI_1966 
Merge gilson-iot-rails4 to master [SCI-1966]
 2018-02-12 11:02:17 +01:00
okriuchykhin 5a94b40d9c
Merge pull request #978 from okriuchykhin/ok_SCI_2003 
Improve files handling in protocol cloning [SCI-2003]
 2018-02-12 11:01:59 +01:00
Zmago Devetak ccba5d3eb3
Merge pull request #992 from ZmagoD/zd_SCI_2015 
setup models for repository list column [fixes SCI-2015]
 2018-02-12 10:59:20 +01:00
zmagod 27b7aff3ea fixed bug with assigned repository items [fixes SCI-2040] 2018-02-12 10:49:35 +01:00
zmagod 36595d33f4 fix name scope 2018-02-12 09:09:56 +01:00
zmagod d12f8403e4 add reference to repository column 2018-02-12 09:05:41 +01:00
zmagod ae99c92516 follow @okriuchykhin 's suggestions 2018-02-09 16:28:21 +01:00
zmagod ace78cfb58 fixes errors with form id duplicates [fixes SCI-2039] 2018-02-09 14:54:16 +01:00
zmagod 557aeca049 refactor relations 2018-02-09 14:11:56 +01:00
zmagod 7c13c5a1f4 fixes typo, follows @okriuchykhin 's suggestions 2018-02-09 11:38:52 +01:00
Zanz2 128f15f984
Merge pull request #990 from Zanz2/code_formatting_sci1822 
Commands in protocols io steps are now properly formatted like code [SCI-1822]
 2018-02-08 08:52:44 +01:00
Zanz2 49a4d9cf23 Tables now no longer have huge whitespace below them, it is now fixed 300 pixels and when its too big the table gets a scrollbar 2018-02-07 15:50:42 +01:00
zmagod 6b7ff11bcf setup models for repository list column [fixes SCI-2015] 2018-02-07 15:28:28 +01:00
Zanz2 60aa1a0953 Authors are now displayed as actual authors, not the person that added the protocol, and the created at date from protocols io is in protocol info, like it was before 2018-02-07 15:12:03 +01:00
Zanz2 a6356d2420 Fixed newline styling, now code is styled in newlines, and since \n doesnt work i change it to <br> with gsub and that allows code to be written into multiple lines 2018-02-07 14:46:25 +01:00
Zmago Devetak e400514020
Merge pull request #981 from ZmagoD/zd_SCI_2026 
fixes bug with step table update [fixes SCI-2026]
 2018-02-07 14:35:15 +01:00
Zmago Devetak b33d09536e
Merge pull request #987 from ZmagoD/zd_SCI_2033 
fixes user dropdown [fixes SCI-2033]
 2018-02-07 14:34:37 +01:00
Zanz2 efaf5ad721 Commands now get styled like code 2018-02-07 13:51:22 +01:00
Zanz2 ef0733b886
Merge pull request #988 from Zanz2/red_error_msg_sci1993 
Accidentally deleted this off master, identical to the branch before [SCI-1993]
 2018-02-07 13:08:45 +01:00
Zanz2 a6e93b8e35 Fixed hound line too long 2018-02-07 13:04:02 +01:00
mlorb edbcdc6bf4
Merge pull request #986 from mlorb/ml-sci-2031 
Fix error on task activity [SCI-2031]
 2018-02-07 11:39:14 +01:00
Zanz2 367eff6401 re-pushing this, this got merged into master already but i accidentally deleted it when merging two branches 2018-02-07 11:17:53 +01:00
Zanz2 e56c0bb100 Tables are now always atleast 5x5, like in scinote when creating new table 2018-02-07 10:55:44 +01:00
Zanz2 f7f46a094e Fixed PR and a mistake i made 2018-02-07 09:53:49 +01:00
Zanz2 167cbc98e5
Merge branch 'master' into yellow_flashv3_SCI1834 2018-02-07 09:42:56 +01:00
Zanz2 80735f2412 Fixed the bug with big text difference in preview and imported protocol 2018-02-07 09:26:45 +01:00
zmagod 695e9d90d2 fixes user dropdown [fixes SCI-2033] 2018-02-07 08:43:42 +01:00
Luka Murn 4389c110cf
Merge pull request #982 from biosistemika/lm-remove-component-loader 
Remove component loader (so builds pass)
 2018-02-06 17:02:08 +01:00
mlorb e151c963e1 fix error on task activity 2018-02-06 16:34:16 +01:00
zmagod 2ad4eb3488 fix bug with checklists 2018-02-06 16:15:10 +01:00
zmagod 75cc9d11df fix error on checklists 2018-02-06 16:06:15 +01:00
Zanz2 a37d4f3cde there are always now atleast 5 rows, like in edit table in repository, so it adds empty rows if there are not atleast 5 originally 2018-02-06 15:46:03 +01:00
Zmago Devetak 25a42658c8
Merge pull request #980 from ZmagoD/zd_SCI_2009 
adds nil check in step_table_element for table name [fixes SCI-2009]
 2018-02-06 15:44:56 +01:00
zmagod bd1345d560 fixes bug with assets upload on task result page, 
adds ctrl+v listener to upload images from clipboard, adds image preview modal
 2018-02-06 15:39:19 +01:00
Zanz2 a2df9777f6
Merge pull request #983 from Zanz2/gen_rep_empty_sci-2000 
fixed empty table name unable to generate reports bug [SCI-2000]
 2018-02-06 14:34:31 +01:00
Zanz2 83e9550feb
Merge pull request #966 from Zanz2/images_not_imported_SCI1807 
Images not imported [SCI-1807]
 2018-02-06 14:33:35 +01:00
Zanz2 f9c6eafe49 most protocol attributes, and step description and step expected result now dont get cut tables when they are at max character limit 2018-02-06 12:04:24 +01:00
Zanz2 9b5ddc6789 moved code from older branch to new master 2018-02-06 11:03:17 +01:00
Zanz2 748af2cbf7 Fixed the issue, table name defaults to empty string space now 2018-02-06 10:29:49 +01:00
Zanz2 dac59cf4d0 Refactored to PR, deleted unrelated things 2018-02-06 09:06:33 +01:00
Luka Murn 4ddc7dfa85 Comment react-hijack code 2018-02-06 08:00:29 +01:00
zmagod b48fa3f231 fixes bug with step table update [fixes SCI-2026] 2018-02-05 17:32:38 +01:00
zmagod ad742ac2d1 adds nil check in ste_table_element for table name [fixes SCI-2009] 2018-02-05 16:27:04 +01:00
zmagod 25dcfe66ae Merge branch 'master' of https://github.com/biosistemika/scinote-web into zd_SCI_1960 2018-02-01 16:04:05 +01:00
Oleksii Kriuchykhin 16e1d072b9 Improve files handling in protocol clonning [SCI-2003] 2018-02-01 15:44:08 +01:00
okriuchykhin def08a3faa
Merge pull request #971 from okriuchykhin/ok_SCI_1968 
Update notification settings accessor names and update Rubocop config [SCI-1968]
 2018-01-31 15:40:09 +01:00
zmagod 366b67ca1c fixes per @mojca 's request 2018-01-31 15:18:18 +01:00
mlorb 39fc52ddf4
Merge pull request #972 from mlorb/ml-sci-1997 
Fix type error at changing task at navigation bar after setting due date [SCI-1997]
 2018-01-31 15:13:28 +01:00
Zmago Devetak ccab688728
Merge pull request #975 from ZmagoD/zd_SCI_2001 
Zd sci 2001
 2018-01-31 14:42:41 +01:00
zmagod b1684dbd5b removed unneeded hook 2018-01-31 14:40:19 +01:00
zmagod 34f5076b04 fixes failin specs [fixes SCI-2001] 2018-01-31 12:05:45 +01:00
mlorb 553039b7b4 fix type error at changing task at navigation bar after seting due date 2018-01-30 13:29:54 +01:00
Oleksii Kriuchykhin 7a769bbfde Update notification settings accessor names and update Rubocop config [SCI-1968] 2018-01-29 16:15:12 +01:00
mlorb 775b8b3201 fix bug with ajax error caused to the other user when deleting column in custom repository 2018-01-29 16:01:33 +01:00
zmagod 029d69b033 revert to old setting [fixes SCI-1967] 2018-01-29 15:42:22 +01:00
Zanz2 0607579d06 Fixes the database error i was having on home machine too, wasnt exclusive to me 2018-01-27 14:57:07 +01:00
Zanz2 70a972c264 Fixed pr and small oversight 2018-01-27 14:33:01 +01:00
Zanz2 2a287193b7 Merge branch 'images_not_imported_SCI1807' of https://github.com/Zanz2/scinote-web into images_fix 2018-01-27 13:50:35 +01:00
Zanz2 e8f6dc0d24
Merge pull request #962 from Zanz2/missing_error_SCI1993 
A red error messagge is now displayed when not selecting protocol [SCI-1993]
 2018-01-26 16:00:15 +01:00
Zanz2 1d4ce42f23 fixed according to PR 2018-01-26 15:29:13 +01:00
Zanz2 98b3ddbdb0
Merge branch 'master' into images_not_imported_SCI1807 2018-01-26 15:13:40 +01:00
Zanz2 a15e624b06
Merge pull request #965 from Zanz2/sub_prot_2short_SCI1995 
Changed sub protocol name length limit to limit of protocol titles on scinote [SCI-1995]
 2018-01-26 15:08:03 +01:00
Oleksii Kriuchykhin 7c14800570 Change base class for API controller [SCI-1966] 2018-01-26 13:34:38 +01:00
Zanz2 e041426a09
Merge pull request #964 from Zanz2/steps_order_SCI1816 
Steps order fix [SCI-1816]
 2018-01-26 11:32:28 +01:00
Zanz2 48b48c945c Refactored hound errors, now that rubocop works 2018-01-26 11:17:49 +01:00
okriuchykhin 94f604ae17
Merge pull request #961 from okriuchykhin/ok_SCI_1994 
Actually return 404 when requested asset doesn't exist [SCI-1994]
 2018-01-26 11:14:59 +01:00
Zanz2 020e9ddc16 Merge branch 'images_not_imported_SCI1807' of https://github.com/Zanz2/scinote-web into images_not_imported_SCI1807 2018-01-26 11:08:47 +01:00
Zanz2 a48fc168a9 deleted un needed function 2018-01-26 11:05:19 +01:00
Zanz2 6f56f829da Now protocols name from attached protocol is shortened based on title limit length (255 characters),also has same limitations as scinote title 2018-01-26 10:49:38 +01:00
Zanz2 4ee51959eb fixed hound 2018-01-26 09:56:59 +01:00
Zanz2 4ed1555ebb small fix, ordering 2018-01-26 09:45:41 +01:00
Zanz2 346f9feaef Refactored pull request, but also just did a quick fix on a bug where special characters in titles of steps (% & #) got escaped by sanitize helper, now the string gets sanitized first, then the special characters get unescaped by CGI. unescape html 2018-01-26 09:34:58 +01:00
Zanz2 24e772d7e5 Merge branch 'steps_order_SCI1816' of https://github.com/Zanz2/scinote-web into steps_order_SCI1816 2018-01-26 08:26:38 +01:00
Zanz2 e484f0569b
Merge pull request #960 from Zanz2/fixed_styling_after_merge 
Fixed some styling bugs that happened after the merge
 2018-01-26 08:19:29 +01:00
Zanz2 fc541147c8 A red error messagge is now displayed when selecting no protocol and pressing upload on protocols io import, and after the modal is closed the messagge is gone 2018-01-25 15:54:38 +01:00
okriuchykhin 0b1f43c1c5
Merge pull request #954 from okriuchykhin/ok_SCI_1970 
Add health check endpoint to API controller [SCI-1970]
 2018-01-25 14:33:37 +01:00
Oleksii Kriuchykhin 7dd9121072 Actually return 404 when requested asset doesn't exist [SCI-1994] 2018-01-25 14:30:04 +01:00
zanzdebian 8bd8c34c4d Fixed some styling bugs that happened after the merge, its using new function now, with old style, ( the old style turns the mouse cursor into a hand when it hovers over button) 2018-01-25 13:45:35 +01:00
mlorb ab2955c9bb
Merge pull request #956 from mlorb/ml-sci-1491 
Add notification for previous task has been completed [SCI-1491]
 2018-01-25 11:35:19 +01:00
Zmago Devetak 4716fc7752
Merge pull request #955 from biosistemika/decoupling 
Decoupling
 2018-01-25 11:33:06 +01:00
Zmago Devetak 1e407bd9c5
removes unneeded classes 2018-01-25 11:00:48 +01:00
Zmago Devetak 4b2098c0c4
removes unneeded permissions 2018-01-24 16:34:48 +01:00
zmagod 76b08e6ac9 add permissions in views 2018-01-24 13:59:57 +01:00
Zanz2 00ac774fde Made images now display in protocol description, before_start, warning,guidelines, manuscript_citation, and also in Step description and step expected result 2018-01-24 13:40:13 +01:00
zmagod 9b836d04fa fixes per @mlorb 's request 2018-01-24 13:21:53 +01:00
Zanz2 7fe1c20ebe Finished the protocol reorder functions and implemented them 2018-01-24 09:31:43 +01:00
Zanz2 96253c1089 Made some functions to help solve reordering of the protocols io steps 2018-01-23 18:40:23 +01:00
Mojca Lorber ac8b1769be add notification for previous task has been completed 2018-01-23 15:53:33 +01:00
zmagod 88d7429041 1. fixes failing unit and integration tests 
2. fixes gem dependencies issues
3. fixes failing migrations
4. updates depricated factory_girl => factory_bot and fixes related issues

Signed-off-by: zmagod <zmago_devetak@yahoo.com>
 2018-01-23 14:54:15 +01:00
okriuchykhin a2896031ab
Merge pull request #951 from okriuchykhin/ok_SCI_1949 
Allow first user seeding from env variables [SCI-1949]
 2018-01-23 14:02:54 +01:00
zmagod f8a3fca2db Merge branch 'master' of https://github.com/biosistemika/scinote-web into decoupling 2018-01-23 11:06:33 +01:00
zmagod 259880c441 add permission helpers for view project and experiment 2018-01-23 08:52:10 +01:00
Oleksii Kriuchykhin 28be7c4fc4 Add health check endpoint to API controller [SCI-1970] 2018-01-22 16:52:48 +01:00
zmagod ee7c646b1d update user settings controllers to new permission system [fixes SCI-1960] 2018-01-22 16:42:26 +01:00
okriuchykhin 73b56beae9
Merge pull request #950 from okriuchykhin/ok_SCI_1329 
Clear selected rows when changing pages on samples table[SCI-1329]
 2018-01-22 15:07:38 +01:00
Oleksii Kriuchykhin 959eddacda Clear selected rows when changing pages on samples table[SCI-1329] 2018-01-18 17:41:35 +01:00
Oleksii Kriuchykhin df28503ec1 Fix fetching protocol name in protocol import [SCI-1951] 2018-01-18 17:25:20 +01:00
Oleksii Kriuchykhin d1a515da90 Allow first user seeding from env variables [SCI-1949] 2018-01-18 16:23:33 +01:00
zmagod 2857857c24 fixes bug with navbar[SCI-1950] 2018-01-18 13:29:47 +01:00
Zmago Devetak 7b28bfa6d4
Merge pull request #937 from ZmagoD/feat/external-components-loader 
Enable loading of external React components
 2018-01-18 11:13:40 +01:00
okriuchykhin aef80f86b5
Merge pull request #934 from okriuchykhin/ok_SCI_1931 
Fix protocol import button [SCI-1931]
 2018-01-18 10:30:19 +01:00
Adrian Oprea f2f624cfa6 Merge branch 'decoupling' of github.com:biosistemika/scinote-web into feat/external-components-loader 
* 'decoupling' of github.com:biosistemika/scinote-web:
  fix(AboutScinoteModal): Enable react optimizations
  Fix addons display in info modal [SCI-1875]
  Set strict version for rubocop gem, because the new one is not compatible with the previously used one. Also updated it to the newest version.
 2018-01-18 10:24:36 +02:00
Adrian Oprea 12fd630d0c fix(AboutScinoteModal): Enable react optimizations 
Children generated within a loop or by an iterator need to be passed
a unique `key` property so React can properly watch their updates and
perform the necessary actions.

Signed-off-by: Adrian Oprea <adrian@oprea.rocks>
 2018-01-18 09:59:37 +02:00
Oleksii Kriuchykhin 91468faaf9 Fix addons display in info modal [SCI-1875] 2018-01-17 18:30:55 +01:00
Adrian Oprea 6d84790bdb Merge branch 'decoupling' of github.com:biosistemika/scinote-web into feat/external-components-loader 
* 'decoupling' of github.com:biosistemika/scinote-web: (21 commits)
  fixes bug in the invitation_controller with full_name sanitization [fixes SCI-1944]
  Remove Addons info test from core [SCI-1875]
  Remove skip_on_import from repository_cell [SCI-1939]
  fixes bug with comment actions dropdown [fixes SCI-1938]
  fixes first element in global activities logs[fixes SCI-1866]
  Fix task repository row selector [SCI-1940]
  Fix repository item export [SCI-1945]
  Fix samples import [SCI-1946]
  adds first date to _list.html.erb view
  Remove Addons caption if no addons in info modal and fix linter packages [SCI-1875]
  Fix repository records import [SCI-1939]
  Fix export samples button [SCI-1936]
  refactor
  adds additional tests for permissions controller
  fix HOC to recive objects
  fixes flow, and before_action in permissions_controller
  fixes per @duco 's request
  remove unneeded import
  add permissions endpoint on the API
  fix request
  ...
 2018-01-17 18:14:41 +02:00
Zmago Devetak b4b6fddca3
Merge pull request #945 from ZmagoD/zd_SCI_1944 
fixes bug in the invitation_controller with full_name sanitization [f…
 2018-01-17 17:02:34 +01:00
Adrian Oprea 157969aa5e HACK: Comment out code which returns invalid data 
It seems like the backend is returning a weird response when queried for
addons. Once the backend issue is identified and fixed this should be
uncommented.

Signed-off-by: Adrian Oprea <adrian@oprea.rocks>
 2018-01-17 17:54:35 +02:00
okriuchykhin 8394055fba
Merge pull request #938 from okriuchykhin/ok_SCI_1875_v2 
Remove Addons caption if no addons in info modal and fix linter packages
 2018-01-17 15:33:43 +01:00
zmagod 488dba378e fixes bug in the invitation_controller with full_name sanitization [fixes SCI-1944] 2018-01-17 15:06:43 +01:00
Zmago Devetak 26f7a94392
Merge pull request #943 from ZmagoD/zd_SCI_1866_v2 
fixes first element both in Rails part an React part off the application
 2018-01-17 14:12:52 +01:00
Zmago Devetak b9e56c49ef
Merge pull request #944 from ZmagoD/zd_SCI_1938 
fixes bug with comment actions dropdown [fixes SCI-1938]
 2018-01-17 13:42:36 +01:00
Adrian Oprea b559f3cbd4 refactor(Navigation): Use identifier instead of screenName 
Signed-off-by: Adrian Oprea <adrian@oprea.rocks>
 2018-01-17 14:40:33 +02:00
Adrian Oprea 4b9013bcab refactor(massageConfiguration): Create response only when we have addons 
Signed-off-by: Adrian Oprea <adrian@oprea.rocks>
 2018-01-17 14:39:42 +02:00
okriuchykhin 38aaaa011c
Merge pull request #936 from okriuchykhin/ok_SCI_1939 
Fix repository records import [SCI-1939]
 2018-01-17 12:55:11 +01:00
Oleksii Kriuchykhin 819febb05b Remove skip_on_import from repository_cell [SCI-1939] 2018-01-17 12:54:32 +01:00
zmagod 5371f5a139 fixes bug with comment actions dropdown [fixes SCI-1938] 2018-01-17 12:54:21 +01:00
okriuchykhin 8ccb361525
Merge pull request #940 from okriuchykhin/ok_SCI_1946 
Fix samples import [SCI-1946]
 2018-01-17 12:51:35 +01:00
okriuchykhin 1692bdade7
Merge pull request #941 from okriuchykhin/ok_SCI_1945 
Fix repository item export [SCI-1945]
 2018-01-17 12:50:22 +01:00
okriuchykhin 2c2914f691
Merge pull request #942 from okriuchykhin/ok_SCI_1940 
Fix task repository row selector [SCI-1940]
 2018-01-17 12:50:11 +01:00
zmagod 0922ee21a7 fixes first element in global activities logs[fixes SCI-1866] 2018-01-17 12:01:58 +01:00
Oleksii Kriuchykhin 74a62c41eb Fix task repository row selector [SCI-1940] 2018-01-17 11:21:41 +01:00
Oleksii Kriuchykhin 86853e8fc1 Fix repository item export [SCI-1945] 2018-01-17 10:39:01 +01:00
Oleksii Kriuchykhin 3c8d8e2fbb Fix samples import [SCI-1946] 2018-01-16 17:50:33 +01:00
Adrian Oprea d71f6161e4 feat(Navigation): Enhance navigation with addons 
Use the withExtras HOC to add external functionality without embedding that knowledge in the core.
 2018-01-16 17:24:11 +02:00
Adrian Oprea d7b63f5941 feat(massageConfiguration): Add data-transformation function 
The meta-configuration structure imposes we change the way `react-hijack` parses and pulls its data. Because that work is both error-prone and also time-consuming, we chose to implement a function that would "massage" the data so it fits the current way react-hijack expects it.
 2018-01-16 17:23:15 +02:00
Adrian Oprea 583efbc9c4 refactor(componentLoader): Add component path at module level 
Instead of forcing this knowledge on the add-on, we inserted it here. The benefit is that we are able to point the core to whatever directory we choose, without modifying each addon in turn.
 2018-01-16 17:19:56 +02:00
Adrian Oprea 350862b0cc feat: Re-export availableAddons 
This will probably be removed and the config will be exported through the main entrypoint.
 2018-01-16 17:18:46 +02:00
Adrian Oprea f6f2bc4c3d feat: Create availableAddons empty config 
This configuration is populated on build-time with the available extras which expose a `client/` directory containing React code.
 2018-01-16 17:17:39 +02:00
zmagod a931a1bc15 adds first date to _list.html.erb view 2018-01-16 14:03:22 +01:00
Oleksii Kriuchykhin b59815c611 Remove Addons caption if no addons in info modal and fix linter packages [SCI-1875] 2018-01-16 11:11:50 +01:00
Adrian Oprea 894e0afd0a feat(componentLoader): Add external component loader module 
For render hijacking to work, imports need to be peformed at core level.
This loader ensures that Webpack is able to resolve the paths to the
external components' code, without the need for extra loaders or custom
built plugins.

Signed-off-by: Adrian Oprea <adrian@oprea.rocks>
 2018-01-16 10:14:35 +02:00
Oleksii Kriuchykhin a64012237e Fix repository records import [SCI-1939] 2018-01-15 18:01:35 +01:00
Oleksii Kriuchykhin 79e1eaf145 Fix export samples button [SCI-1936] 2018-01-15 13:54:08 +01:00
Oleksii Kriuchykhin deabd39a98 Fix protocol import button [SCI-1931] 2018-01-15 13:43:09 +01:00
okriuchykhin 00927be287
Merge pull request #932 from okriuchykhin/ok_SCI_1915 
Improve XLSX parsing with Roo [SCI-1915]
 2018-01-12 14:57:17 +01:00
Zmago Devetak ebd354e4d5
Merge pull request #900 from ZmagoD/zd_SCI_1854 
adds premissions service to FE
 2018-01-12 14:24:28 +01:00
Zanz2 b105920d4e
Merge pull request #901 from Zanz2/code_refactor 
Protocols.io code beautification and refactoring [SCI-1929]
 2018-01-12 12:34:00 +01:00
zmagod 371491c259 refactor 2018-01-12 11:38:52 +01:00
Zanz2 3c6d37ce64 Fixed according to PR review 2018-01-11 18:37:36 +01:00
Oleksii Kriuchykhin 2ddb0ea009 Improve XLSX parsing with Roo [SCI-1915] 2018-01-11 17:52:57 +01:00
mlorb aba426091c add render 403 for create team permission 2018-01-10 10:47:45 +01:00
mlorb 6c4514f550 add create_teams permission checks 2018-01-09 15:28:27 +01:00
zmagod 0d7c116de1 Merge branch 'decoupling-settings-page' of https://github.com/biosistemika/scinote-web into zd_SCI_1854 2018-01-09 10:03:02 +01:00
zmagod c5379896c0 fix HOC to recive objects 2018-01-08 16:28:20 +01:00
Zmago Devetak 4e4cae9a48
Merge pull request #927 from ZmagoD/zd_SCI_1867 
fix import protocol preview [fixes SCI-1867]
 2018-01-08 14:21:44 +01:00
Zmago Devetak 0e6931b1f3
Merge pull request #908 from ZmagoD/zd_SCI_1866 
Wrong date at activity
 2018-01-08 14:20:26 +01:00
zmagod c07f54a0c7 Merge branch 'decoupling-settings-page' of https://github.com/biosistemika/scinote-web into zd_SCI_1854 2018-01-08 08:38:14 +01:00
zmagod 7af4816ce8 removes js brakepoint 2018-01-05 17:13:39 +01:00
zmagod 455534ef9a fixes list keys 2018-01-05 17:11:38 +01:00
zmagod eb8124ea5a follow @duco 's suggestions 2018-01-05 17:08:00 +01:00
mlorb fd6dfbd561 rename create_teams 2018-01-05 16:47:48 +01:00
mlorb e76ec7f4a4
Merge pull request #911 from mlorb/ml-sci-1797 
Permissions - refactor organization & team level permissions (core) [SCI-1797]
 2018-01-05 16:03:55 +01:00
mlorb efb4ce289c fix and/or use 2018-01-05 15:52:41 +01:00
zmagod 3fae267547 fix import protocol preview [fixes SCI-1867] 2018-01-05 15:30:11 +01:00
mlorb 99185871c4 fix naming things 2018-01-05 15:15:50 +01:00
mlorb 70ae14a9b8 refactor manage repository permissions again because of addons 2018-01-05 11:17:01 +01:00
mlorb ec851caa80 refactor manage repository column permissions again because of addons 2018-01-05 10:43:59 +01:00
zmagod be014000ab fixes flow-types 2018-01-05 09:59:08 +01:00
zmagod 862b73cae7 Merge branch 'decoupling-settings-page' of https://github.com/biosistemika/scinote-web into zd_SCI_1866 2018-01-05 09:13:43 +01:00
zmagod 0d72851bb5 fixes bug with displaying assign/unassign button [fixes SCI-1870] 2018-01-04 17:20:17 +01:00
okriuchykhin 4cdbecc3bc
Merge pull request #923 from okriuchykhin/ok_SCI_1869 
Add project/task path with tooltips to activities [SCI-1869]
 2018-01-04 16:44:35 +01:00
Oleksii Kriuchykhin 53f4db9352 Code refactoring [SCI-1869] 2018-01-04 14:56:16 +01:00
okriuchykhin b0f8c36677
Merge pull request #917 from okriuchykhin/ok_SCI_1870 
Fix adding users to a task [SCI-1870]
 2018-01-04 14:14:05 +01:00
okriuchykhin e49ffb61d4
Merge pull request #914 from okriuchykhin/ok_SCI_1873 
Fix repositories [SCI-1873]
 2018-01-04 13:33:30 +01:00
mlorb abced181d5 refactor manage repository rows permissions again because of addons 2018-01-04 11:53:58 +01:00
Oleksii Kriuchykhin 070711917e Code fixes [SCI-1873] 2018-01-04 11:25:34 +01:00
zmagod e0e3ef9359 fixes flow, and before_action in permissions_controller 2018-01-03 17:23:50 +01:00
okriuchykhin d149facd50
Merge pull request #922 from okriuchykhin/ok_SCI_1875 
Fix about modal [SCI-1875]
 2018-01-03 17:00:29 +01:00
mlorb 0c519b8f03 refactor manage sample elements permissions again because of addons 2018-01-03 16:37:02 +01:00
okriuchykhin 3d3b1d3a44
Merge pull request #921 from okriuchykhin/ok_SCI_1648 
Fix assign repository record button in tasks when one record is selected [SCI-1648]
 2018-01-03 16:28:34 +01:00
okriuchykhin ac7746ae91
Merge pull request #916 from okriuchykhin/ok_SCI_1871 
Fix canvas update [SCI-1871]
 2018-01-03 15:47:10 +01:00
okriuchykhin ff62a36788
Merge pull request #910 from okriuchykhin/ok_SCI_1838 
Change invite users to project link to new settings page [SCI-1838]
 2018-01-03 14:47:26 +01:00
okriuchykhin b8fa3c4d51
Merge pull request #905 from okriuchykhin/ok_SCI_1865 
Add icons for different notification types in recent notification dropdown [SCI-1865]
 2018-01-03 14:23:53 +01:00
zmagod 1d3881b649 fixes bug with duplicated activities and wrong date separators [fixes SCI-1866] 2018-01-03 13:48:59 +01:00
mlorb dc68b3068b fix Rails 5.1 bug with params 2018-01-03 13:19:56 +01:00
Oleksii Kriuchykhin 2e275d6d67 Add project/task path with tooltips to activities [SCI-1869] 2017-12-28 15:13:39 +01:00
Zanz2 7bad722553 Made small oversight and fixed it 2017-12-24 02:06:14 +01:00
Zanz2 83e1b04c7a Fixed pull request 2017-12-24 01:49:04 +01:00
Oleksii Kriuchykhin 89230bd730 Fix about modal [SCI-1875] 2017-12-22 18:27:20 +01:00
Oleksii Kriuchykhin 27008be50e Fix assign repository record button in tasks when one record is selected [SCI-1648] 2017-12-22 18:05:22 +01:00
okriuchykhin 0a6d0d1a47
Merge pull request #918 from okriuchykhin/ok_SCI_1893 
Fix invite users dropdown [SCI-1893]
 2017-12-22 16:58:49 +01:00
Oleksii Kriuchykhin 917c2cf28e Fix experiment workflow image update indicator [SCI-1872] 2017-12-22 13:12:52 +01:00
Oleksii Kriuchykhin afb579bef1 Fix invite users dropdown [SCI-1893] 2017-12-21 16:49:10 +01:00
mlorb 0774b6f7e6 refactor manage samples permissions again, so that addons permissions can be added 2017-12-20 16:05:05 +01:00
Oleksii Kriuchykhin 49ae9bcd55 Fix adding users to a task [SCI-1870] 2017-12-20 13:44:21 +01:00
Oleksii Kriuchykhin 66869fe4cf Fix canvas update [SCI-1871] 2017-12-20 11:44:11 +01:00
Oleksii Kriuchykhin 512ee07bde Fix repositories [SCI-1873] 2017-12-19 17:53:45 +01:00
Oleksii Kriuchykhin 1a81a99ff0 Remove Creek XLSX parser gem as it causes conflicts [SCI-1891] 2017-12-19 16:17:11 +01:00
Luka Murn cf291bf887 Merge branch 'gilson-iot-rails4' 
Conflicts:
	Gemfile.lock
 2017-12-19 10:56:39 +01:00
Zanz2 53561ffd84 Refactored according to PR 2017-12-15 20:39:15 +01:00
mlorb bd7eda1506 fix failing tests 2017-12-14 14:18:18 +01:00
mlorb 2936770c01 refactor can view team users ATWHO permission 2017-12-14 14:18:18 +01:00
mlorb 5c790287ec refactor again manage user team permissions 2017-12-14 14:18:18 +01:00
mlorb 7c1ae6bc82 refactor manage repository permissions 2017-12-14 14:18:18 +01:00
mlorb 2918a9833d refactor manage repository column permissions 2017-12-14 14:18:18 +01:00
mlorb 3f5e9e60b7 refactor view repository permission 2017-12-14 14:18:18 +01:00
mlorb 079ac7a4d3 refactor manage repository row permissions 2017-12-14 14:18:18 +01:00
mlorb 740ecc674b refactor view repositories permission 2017-12-14 14:18:18 +01:00
mlorb 3ca51f097f refactor manage sample permissions again by removing authorship and refactor manage sample elements permissions 2017-12-14 14:18:17 +01:00
mlorb e577b363b2 byTheWay fix of Rails 5.1 bug 2017-12-14 14:18:17 +01:00
mlorb 29f9414839 refactor create project permission 2017-12-14 14:18:17 +01:00
mlorb 72023c7dfe refactor update/delete sample permissions 2017-12-14 14:18:17 +01:00
mlorb b09377cd8d refactor update sample permission 2017-12-14 14:18:17 +01:00
mlorb f801ed8eb6 refactor view/export samples permission 2017-12-14 14:18:16 +01:00
mlorb 0d37f9c85a refactor clone protocol permission 2017-12-14 14:18:16 +01:00
mlorb f6d36ae6a2 refactor update protocol type in repository 2017-12-14 14:18:16 +01:00
mlorb 806fcbce36 refactor update protocol in repository permission 2017-12-14 14:18:16 +01:00
mlorb e0d1ae174e refactor read protocol in repository permission 2017-12-14 14:18:15 +01:00
mlorb a3a494c3a2 fix banana: remove dead code which strangely reappeared, probably with some rebasing 2017-12-14 14:18:15 +01:00
mlorb ccc2451494 refactor create sample permissions 2017-12-14 14:18:15 +01:00
mlorb 43c01b74b1 refactor create protocol permission 2017-12-14 14:18:14 +01:00
mlorb 11a3cd196c add create, update team permission and refactor 422 respond handling in controllers 2017-12-14 14:18:14 +01:00
mlorb 8893fd668d add create, update, delete user_team permission 2017-12-14 14:18:14 +01:00
mlorb a0b2d3f5ef refactor read_team permission 2017-12-14 14:18:14 +01:00
zmagod 219ef3baf6 setup new pagination for activities 2017-12-14 14:02:40 +01:00
Oleksii Kriuchykhin 4ff6e87fed Change invite users to project link to new settings page [SCI-1838] 2017-12-14 11:22:28 +01:00
Oleksii Kriuchykhin 7bdc22ee80 Remove default property [SCI-1865] 2017-12-13 17:28:05 +01:00
Oleksii Kriuchykhin 6986d11cfe Add Flow types for notifications [SCI-1865] 2017-12-13 17:25:25 +01:00
zmagod 249d3d7698 fixes current timezone setup for activities 2017-12-13 16:48:31 +01:00
okriuchykhin 2fa7591f36
Merge pull request #903 from okriuchykhin/ok_SCI_1864 
Rename notifications settings accessor [SCI-1864]
 2017-12-13 12:57:56 +01:00
Oleksii Kriuchykhin baf3151bb0 Fix notification settings accessors [SCI-1864] 2017-12-13 11:59:53 +01:00
zmagod b106545d31 fixes per @duco 's request 2017-12-13 08:57:50 +01:00
Oleksii Kriuchykhin ea63864b33 Add icons for different notification types in recent notification dropdown [SCI-1865] 2017-12-12 17:05:08 +01:00
Zmago Devetak 00be4460cc
Merge pull request #806 from ZmagoD/disable_tiny_mce_asset_unless_step 
Fixes bug with embedded images [SCI-1624]
 2017-12-12 09:53:24 +01:00
Zanz2 1fc8b2a2b2 quick fix un-needed styling 2017-12-10 01:45:47 +01:00
Zanz2 11dc3be9d4 It is now possible to scroll down preview modal 2017-12-10 01:41:21 +01:00
Zanz2 d0a9198408 Fixed the styling 2017-12-10 01:20:08 +01:00
Oleksii Kriuchykhin 6256acdfea Rename notifications settings accessor [SCI-1864] 2017-12-07 13:59:33 +01:00
Luka Murn 86ac07c69f
Merge pull request #902 from biosistemika/rails-5.1 
Merge rails-5.1 into decoupling-settings-page
 2017-12-07 09:25:11 +01:00
okriuchykhin b3b0e367e8
Merge pull request #889 from okriuchykhin/ok_SCI_1747 
Improve server side assets validation display for steps [SCI-1747]
 2017-12-04 14:12:43 +01:00
zmagod 52e5cf7be8 remove unneeded import 2017-12-04 13:27:24 +01:00
zmagod e01e7bebbf add permissions endpoint on the API 2017-12-04 13:25:48 +01:00
Zanz2 b0012ab936 Simplified repeating method calls 2017-12-03 16:50:06 +01:00
Zanz2 fcbd956d6e Finished code beautification 2017-12-03 01:17:49 +01:00
Zanz2 835ac6910f Code refactor part 1 2017-12-02 00:29:47 +01:00
Zmago Devetak 205d3b3d8f
Merge pull request #894 from ZmagoD/zd_SCI_1650 
Adds task to copy images [fixes SCI-1650]
 2017-12-01 17:32:09 +01:00
zmagod b6a5ab5e6c fix request 2017-12-01 17:29:46 +01:00
zmagod 52b278fe78 adds premissions service to FE 2017-12-01 17:15:15 +01:00
Oleksii Kriuchykhin 373d7e8aa6 Clear selected files after successful upload [SCI-1747] 2017-12-01 11:51:22 +01:00
Oleksii Kriuchykhin c4fe2b1c11 Fix jsPlumb library loading [SCI-1839] 2017-12-01 10:48:07 +01:00
okriuchykhin 16729ccd7d
Merge pull request #898 from okriuchykhin/ok_SCI_1838 
Fix assignment of users to projects [SCI-1838]
 2017-11-30 11:16:07 +01:00
okriuchykhin 9ed73702c5
Merge pull request #896 from okriuchykhin/ok_SCI_1837 
Fix Ajax calls with redirect [SCI-1837]
 2017-11-30 11:00:26 +01:00
Oleksii Kriuchykhin 194054d973 Fix assignment of users to projects [SCI-1838] 2017-11-29 22:55:10 +01:00
Oleksii Kriuchykhin 7bb52191cd Fix Ajax calls with redirect [SCI-1837] 2017-11-29 16:13:28 +01:00
Oleksii Kriuchykhin 745dac09a7 Improve clean-up of dropped files [SCI-1747] 2017-11-28 16:48:47 +01:00
Oleksii Kriuchykhin 6964ed2dbb Add initialization of the selectpicker on experiments actions [SCI-1840] 2017-11-28 16:34:30 +01:00
zmagod 7442684846 fix protocol preview, remove unneeded functions, fix copy paste tokens 2017-11-28 14:16:20 +01:00
Oleksii Kriuchykhin e35031dd9a Small code fixies [SCI-1747] 2017-11-28 11:34:57 +01:00
zmagod e233fbe1d8 fix image removing from tinymce 2017-11-28 11:01:07 +01:00
Zanz2 bb8aef3b73
Merge pull request #893 from Zanz2/step_desc_2small_SCI-1833 
Fixed validations lengths and added workarounds for bugs [SCI-1833]
 2017-11-24 17:55:20 +01:00
zmagod e69e9f6794 remove unneeded comment and add tiny_mce_asset regex in a constant 2017-11-24 17:04:01 +01:00
zmagod 066c782cd2 Merge branch 'master' of https://github.com/biosistemika/scinote-web into disable_tiny_mce_asset_unless_step 2017-11-24 16:29:32 +01:00
Zmago Devetak 027f4a5921
Merge pull request #890 from ZmagoD/zd_SCI_1651 
export and import RTE images
 2017-11-24 16:28:28 +01:00
Zmago Devetak 728f656472
update protocols_exporter.rb 2017-11-24 15:23:19 +01:00
Zmago Devetak 3cd7e6fdde
fix open method 2017-11-24 15:19:58 +01:00
Zanz2 0e574b2f15 removed un needed limits 2017-11-24 11:49:57 +01:00
zmagod d200e355ed follow @Ducz0r 's suggestions 2017-11-24 11:45:07 +01:00
Zanz2 e7e37939a9 quick fix to expected result losing html 2017-11-24 11:18:12 +01:00
Zanz2 dc5904aed9 Fixed this jira issue and added workarounds for bugs 2017-11-24 01:45:40 +01:00
mlorb 9e7b75a880
Merge pull request #892 from mlorb/ml-sci-1215_v2 
Make background gray for paperclip images [SCI-1215]
 2017-11-23 17:32:09 +01:00
Mojca Lorber 0ffe476a54 make background gray for paperclip images 2017-11-23 14:35:42 +01:00
mlorb c46d630f0b
Merge pull request #891 from mlorb/ml-sci-1617 
Add copying of TinyMce assets when cloning the protocol [SCI-1617]
 2017-11-23 14:31:29 +01:00
Luka Murn 00fe267a2a Minor codestyle fixes 2017-11-23 11:33:39 +01:00
Zanz2 764e5259d1 Fixed last review, and a bug i found 2017-11-22 23:38:22 +01:00
Mojca Lorber fe5828fa97 add copying of TinyMce assets when cloning the protocol 2017-11-22 16:47:21 +01:00
zmagod afbeafb137 adds RTE images import, disables turbolinks on edit step actions 2017-11-22 16:28:14 +01:00
Zanz2 692ed62d6d made case statement nicer 2017-11-21 21:27:19 +01:00
Zanz2 f577bf93b5 Fixed pull request review 2017-11-21 19:20:15 +01:00
zmagod 91fec89cab adds tiny_mce_assets to protocol export 2017-11-21 16:30:48 +01:00
Oleksii Kriuchykhin fe8b7d26c1 Improve server side assets validation display for steps [SCI-1747] 2017-11-21 13:48:06 +01:00
Zanz2 8226322e92 Fixed open html tags on truncate 2017-11-21 11:42:42 +01:00
Zanz2 529d988cc3 closing html tags 2017-11-21 11:15:09 +01:00
Zanz2 d8c809ffd0 Reviewed pull request 2017-11-20 23:19:34 +01:00
Zanz2 e943df9176 fixed small rubocop error 2017-11-20 01:02:02 +01:00
Zanz2 cf66d94d45 Reworked functions into one function, defined all protocols.io attributes as dynamic constants, applied length checking to all protocols.io attribute fields 2017-11-20 00:59:32 +01:00
Zanz2 99b16f339d New maximums, functions reworked 2017-11-17 15:16:17 +01:00
Zanz2 a6009806c4 Fixed some oversights 2017-11-17 02:56:16 +01:00
Zanz2 fa25a6785b Made the propper files and functionality for the text truncation to function 2017-11-17 02:43:32 +01:00
Zanz2 b2e1623cf1 Merge branch 'master' of https://github.com/biosistemika/scinote-web into validations_cutoff_SCI-1784 2017-11-16 20:04:12 +01:00
Zanz2 c44465817d Added the functions and put in limitations from my validations files, changed controller name, added some locals 2017-11-16 20:03:44 +01:00
Luka Murn d715eb06ef Add team & project role-related helper functions to User model 
This will be required later once we start using Canaid.
 2017-11-16 15:50:30 +01:00
Zanz2 1b540a75a1 Fixed to use .megabytes 2017-11-16 15:17:13 +01:00
Zanz2 e782f13a7d Merge branch 'master' of github.com:Zanz2/scinote-web into size_limit_small_SCI-1810 2017-11-16 15:14:01 +01:00
okriuchykhin 42f2d7e685
Merge pull request #883 from okriuchykhin/ok_SCI_1819 
Allow import of the sample with missing non mandatory fields [SCI-1819]
 2017-11-16 11:03:08 +01:00
mlorb 6c80c338e4
Merge pull request #880 from mlorb/ml-sci-1316 
Change text for avatar size on my profile page [SCI-1316]
 2017-11-16 10:43:23 +01:00
Zanz2 41c1193a78 Fixed unit error;Now when comparing file size, both are in bytes 2017-11-16 01:34:38 +01:00
Zanz2 4d65ad59fe
Merge pull request #878 from Zanz2/protocol_description_fix 
Found a bug; i forot to include protocol description in new preview modal
 2017-11-16 01:11:52 +01:00
Oleksii Kriuchykhin f202687291 Allow import of the sample with missing non mandatory fields [SCI-1819] 2017-11-15 16:40:14 +01:00