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1490 commits

Author SHA1 Message Date
Oleksii Kriuchykhin
6cf9149baa Add user id tracking when discarding repository [SCI-2462] 2018-05-29 15:33:02 +02:00
zmagod
89046e9787 fixes items assign flash message [fixes SCI-2395] 2018-05-29 12:54:41 +02:00
okriuchykhin
6deaa7235b
Merge pull request #1136 from okriuchykhin/ok_SCI_2396 
Handle situation with smart annotations and zero inventories [SCI-2396]
 2018-05-28 17:23:29 +02:00
Zmago Devetak
147e74b4a5
Merge pull request #1164 from ZmagoD/zd_SCI_2448 
adds discard gem, move deletion of repositories in a rake task to run…
 2018-05-28 15:04:54 +02:00
Zmago Devetak
ad5114090f
Merge pull request #1165 from ZmagoD/zd_SCI_2433 
fixes tast description/due-date modal [fixes SCI-2433]
 2018-05-28 13:10:15 +02:00
okriuchykhin
0e6c89c3de
Merge pull request #1166 from okriuchykhin/ok_SCI_2342 
Fix WOPI controller to support repositories [SCI-2342]
 2018-05-28 13:07:17 +02:00
zmagod
c683cfdbd7 triggers the delayed job in the controller action, fixes smart annotations 2018-05-25 11:41:43 +02:00
Oleksii Kriuchykhin
46d6accf78 Fix search in repositories [SCI-2428] 2018-05-24 17:14:40 +02:00
Oleksii Kriuchykhin
b019ab8f61 Fix WOPI controller to support repositories [SCI-2342] 2018-05-24 16:51:25 +02:00
zmagod
10351bbf83 fixes tast description/due-date modal [fixes SCI-2433] 2018-05-24 16:44:10 +02:00
zmagod
1f8db7bc49 Merge branch 'ux-release-1' of https://github.com/biosistemika/scinote-web into zd_SCI_2340 2018-05-24 15:00:59 +02:00
okriuchykhin
7b08529e39
Merge pull request #1156 from okriuchykhin/ok_SCI_2342 
Enable editing office online files in inventories [SCI-2342]
 2018-05-23 12:59:12 +02:00
Luka Murn
31a1641b42
Merge pull request #1155 from Ducz0r/lm-sci-2436-fix 
Update new repository row code so file columns work again [SCI-2436]
 2018-05-22 09:27:32 +02:00
Oleksii Kriuchykhin
5c41527b92 Enable editing office online files in inventories [SCI-2342] 2018-05-21 15:48:48 +02:00
Luka Murn
6135081a71 Update new repository row code so file columns work again 
Also fix backend code a bit (so update & create of repository rows
are more similar in their behavior), and fix line in JS:
_initSelectPicker() was called a reduntant amount of times when
editing repository row.

Closes SCI-2436.
 2018-05-21 14:46:30 +02:00
zmagod
ba2aafae39 fix access to public reports [fixes SCI-2340] 2018-05-21 14:45:18 +02:00
zmagod
5514683f96 shorten project name [fixes SCI-2344] 2018-05-18 14:12:12 +02:00
zmagod
38b0cb742c removes empty space 2018-05-17 15:21:45 +02:00
zmagod
e019767e90 refactor save_pdf_to_inventory_item service 2018-05-17 13:17:19 +02:00
zmagod
b125863baf Merge branch 'ux-release-1' of https://github.com/biosistemika/scinote-web into zd_SCI_2371 2018-05-17 11:25:33 +02:00
zmagod
ca0c8cbb71 fixes typos, fixes pdf rendering 2018-05-17 11:21:34 +02:00
Zmago Devetak
9d2303c777
Merge pull request #1115 from ZmagoD/zd_SCI_2321 
fixes images preview in repository/library [fixes SCI-2321]
 2018-05-16 12:05:33 +02:00
okriuchykhin
19ed711ce2
Merge pull request #1142 from okriuchykhin/ok_SCI_2411 
Fix pagination in global search inside repositories [SCI-2411]
 2018-05-16 10:19:05 +02:00
okriuchykhin
3e2b455d2c
Merge pull request #1139 from okriuchykhin/ok_SCI_2385 
Fix task resore permissions [SCI-2385]
 2018-05-16 10:17:51 +02:00
zmagod
4573655ec8 adds save PDF report to inventory feature [fixes SCI-2371] 2018-05-16 09:31:19 +02:00
Oleksii Kriuchykhin
0ca0884937 Fix pagination in global search inside repositories [SCI-2411] 2018-05-15 17:48:48 +02:00
Oleksii Kriuchykhin
1d0536b064 Fix task resore permissions [SCI-2385] 2018-05-15 11:51:53 +02:00
Oleksii Kriuchykhin
addf4cfe5e Handle situation with smart annotations and zero inventories [SCI-2396] 2018-05-14 15:34:23 +02:00
Oleksii Kriuchykhin
a92abc5995 Fix editing of inventory rows with existing files [SCI-2394] 2018-05-14 14:26:01 +02:00
okriuchykhin
3b4d9fe744
Merge pull request #1132 from okriuchykhin/ok_SCI_2301 
Move REPOSITORIES_LIMIT from constants to env variables [SCI-2301]
 2018-05-10 10:46:25 +02:00
zmagod
e5c3fb6af2 Merge branch 'ux-release-1' of https://github.com/biosistemika/scinote-web into zd_SCI_2321 2018-05-10 10:38:56 +02:00
Zmago Devetak
0a4deeaa35
Merge pull request #1112 from ZmagoD/zd_SCI_2261 
propagate assigned repository items in workflow [fixes SCI-2261]
 2018-05-10 09:57:49 +02:00
zmagod
0fe499d4a1 adds the update action to repository records last_modified_by field when downstreaming assigned records 2018-05-10 09:04:12 +02:00
Oleksii Kriuchykhin
8ec643c54b Move REPOSITORIES_LIMIT from constants to env variables [SCI-2301] 2018-05-09 18:03:16 +02:00
Zmago Devetak
a6275062b7
Merge pull request #1126 from ZmagoD/zd_SCI_2344 
adds new string truncation method [fixes SCI-2344]
 2018-05-07 16:30:12 +02:00
zmagod
fa30278153 change dropdown lenght 2018-05-03 16:25:59 +02:00
zmagod
0b721d86b1 adds new string truncation method [fixes SCI-2344] 2018-05-03 14:24:23 +02:00
mlorb
d2c0ae241e
Merge pull request #1121 from mlorb/ml-sci-2244 
Update buttons positions and wording throughout app [SCI-2244]
 2018-05-03 11:05:15 +02:00
zmagod
66b676b5ce Merge branch 'ux-release-1' of https://github.com/biosistemika/scinote-web into zd_SCI_2321 2018-04-26 17:04:36 +02:00
zmagod
0afe461962 fixes download link 2018-04-26 17:00:51 +02:00
zmagod
e9642cadad Merge branch 'ux-release-1' of https://github.com/biosistemika/scinote-web into zd_SCI_2304 2018-04-26 14:26:30 +02:00
zmagod
ca539cdce8 remove samples from search 2018-04-26 14:25:02 +02:00
zmagod
8dac887f10 Merge branch 'ux-release-1' of https://github.com/biosistemika/scinote-web into zd_SCI_2261 2018-04-26 14:18:41 +02:00
zmagod
24acd5c779 fixes per @duco 's request 2018-04-26 14:13:46 +02:00
mlorb
88d5ba369d
Merge branch 'ux-release-1' into ml-sci-2244 2018-04-26 14:07:03 +02:00
Luka Murn
cb6fe50832 Merge branch 'master' into ux-release-1 
Conflicts:
	app/assets/javascripts/repositories/index.js
 2018-04-26 11:38:54 +02:00
Zmago Devetak
a6b2bb0228
Merge pull request #1120 from ZmagoD/zd_SCI_2338 
add permission check to repostiory show action [fixes SCI-2338]
 2018-04-26 09:41:43 +02:00
mlorb
9e11f3b220 update buttons positions and wording throughout app 2018-04-25 13:57:12 +02:00
Luka Murn
cd04596c62
Merge pull request #1111 from Ducz0r/lm-sci-2276-fix 
Update the code for repository table states so it (hopefully) causes less errors [SCI-2276]
 2018-04-25 12:37:27 +02:00
zmagod
12365b3f0f add permission check to repostiory show action [fixes SCI-2338] 2018-04-25 11:56:30 +02:00
zmagod
c2d19fee52 fixes images preview in repository/library [fixes SCI-2321] 2018-04-24 13:11:55 +02:00
Zmago Devetak
096167c125
Merge pull request #1101 from ZmagoD/zd_SCI_2124 
adds new reports index page [fixes SCI-2124]
 2018-04-23 12:42:24 +02:00
zmagod
199a2a23bf fixes per @mlorb 's request 2018-04-23 12:26:21 +02:00
zmagod
824962c084 propagate assigned repository items in workflow [fixes SCI-2261] 2018-04-23 11:33:16 +02:00
Luka Murn
d023db16af Update the destroy_column action so it properly updates all states 2018-04-20 12:31:22 +02:00
Luka Murn
21e7e7057e Refactor all the methods into two new services 2018-04-20 12:31:22 +02:00
Luka Murn
d8ca42aa0c Refactor repository_table_state and its class methods 2018-04-20 12:31:22 +02:00
Luka Murn
5e2622ecfc Change default repository state to Ruby representation 
Also remove some dead code from repositories datatables
 2018-04-20 12:31:22 +02:00
zmagod
e96b690a5b removes reports link from secondary navigation, fix bug with turbolinks 2018-04-20 11:57:52 +02:00
Zmago Devetak
76c4202664
Merge pull request #1110 from ZmagoD/zd_SCI_2311 
fixes controller action in manage_columns
 2018-04-20 10:36:31 +02:00
zmagod
dafa29d4bf Merge branch 'ux-release-1' of https://github.com/biosistemika/scinote-web into zd_SCI_2124 2018-04-20 10:33:15 +02:00
zmagod
74f23ee461 fixes controller action in manage_columns 2018-04-20 09:53:15 +02:00
mlorb
3249d5db0d
Merge pull request #1100 from mlorb/ml-sci-2303 
Update reports show page to work with new navigation [SCI-2303]
 2018-04-20 09:50:35 +02:00
Zmago Devetak
93fc1af12d
Merge pull request #1083 from ZmagoD/zd_SCI_2259 
set limit on maximum number of dropdown list items [fixes SCI-2259]
 2018-04-19 17:17:54 +02:00
Zmago Devetak
1290435372
Merge pull request #1086 from ZmagoD/zd_SCI_2207 
enables copying of repository items [fixes SCI-2207]
 2018-04-19 17:13:43 +02:00
zmagod
ce52eb851b add validation to dropdown items 2018-04-19 14:02:42 +02:00
zmagod
9d282d1800 adds new reports index page [fixes SCI-2124] 2018-04-18 16:47:52 +02:00
mlorb
cc34376253 update reports show page to work with new navigation 2018-04-18 14:40:53 +02:00
mlorb
600ec99c82 fix project navigation to work with archived pages and correct current team 2018-04-17 13:52:43 +02:00
Zmago Devetak
f90589d714
Merge pull request #1095 from ZmagoD/zd_SCI_2300 
fixes archive button [fixes SCI-2300]
 2018-04-16 16:19:21 +02:00
Zmago Devetak
a0f549e935
Merge pull request #1093 from ZmagoD/zd_SCI_2296 
hides the create new inventory button for non admin users [fixes SCI-…
 2018-04-16 16:18:15 +02:00
mlorb
dceef349a4 fix bug and some refectoring 2018-04-16 14:10:49 +02:00
zmagod
a2d8285f35 fixes archive button but [fixes SCI-2300] 2018-04-16 09:22:10 +02:00
mlorb
2627efe402 implement file column type when editing & creating new rows in inventories DataTables 2018-04-13 17:21:17 +02:00
zmagod
bef166ff30 hides the create new inventory button for non admin users [fixes SCI-2296] 2018-04-13 13:39:58 +02:00
zmagod
4f21833373 changes per @duco 's request 2018-04-13 11:47:33 +02:00
Luka Murn
09c60d2468 Fixes per @Ducz0r's request 2018-04-12 14:38:22 +02:00
Luka Murn
9bf8b5d864 Merge branch 'ok_SCI_1860' of https://github.com/okriuchykhin/scinote-web into okriuchykhin-ok_SCI_1860 
Conflicts:
	Makefile
	app/assets/javascripts/projects/index.js.erb
	app/assets/stylesheets/themes/scinote.scss
	config/locales/en.yml
 2018-04-12 13:16:46 +02:00
zmagod
6291857bbf enables copying of repository items [fixes SCI-2207] 2018-04-11 17:17:19 +02:00
zmagod
e4b49e62a3 fixes import limit 2018-04-10 15:45:51 +02:00
mlorb
a10f671184
Merge pull request #1081 from mlorb/ml-sci-2123 
Refactor settings into the new navigation bar [SCI-2123]
 2018-04-09 13:21:16 +02:00
mlorb
80fe1dd73b fix travis 2018-04-06 17:16:04 +02:00
Zmago Devetak
bdb6554870
Merge pull request #1049 from ZmagoD/zd_SCI_2218_2219 
adds manage columns page
 2018-04-06 17:06:28 +02:00
zmagod
cf7761daaa Merge branch 'ux-release-1' of https://github.com/biosistemika/scinote-web into ok_SCI_2223 2018-04-06 12:56:39 +02:00
mlorb
b8e91e91a1 refactor settings into the new navigation bar 2018-04-05 16:30:02 +02:00
zmagod
515c95061c fixes delete column action 2018-04-05 09:56:09 +02:00
zmagod
a8a19df06d Merge branch 'ux-release-1' of https://github.com/biosistemika/scinote-web into zd_SCI_2218_2219 2018-04-05 08:51:58 +02:00
zmagod
0c05c60ebf Merge branch 'ux-release-1' of https://github.com/biosistemika/scinote-web into zd_SCI_2218_2219 2018-04-04 16:06:38 +02:00
Oleksii Kriuchykhin
3b7977ee3b Merge latest changes from ux-release-1 [SCI-2217] 2018-04-04 14:20:34 +02:00
zmagod
38b84edfb0 Merge branch 'ux-release-1' of https://github.com/biosistemika/scinote-web into zd_SCI_2139_2121 2018-04-04 12:59:41 +02:00
Oleksii Kriuchykhin
d8d2d75631 Fix repository rows permissions [SCI-2265] 2018-04-02 20:48:44 +02:00
Oleksii Kriuchykhin
51860652c1 Refactor smart annotations modal [SCI-2223] 2018-04-02 20:38:56 +02:00
okriuchykhin
5e0cf58bc5
Merge pull request #1058 from okriuchykhin/ok_SCI_2111 
Implement search in file repository cells and improve performance [SCI-2111]
 2018-03-30 12:39:47 +02:00
Oleksii Kriuchykhin
cc5d8550b1 Refactor file preview modal [SCI-2217] 2018-03-30 11:50:28 +02:00
zmagod
56b0900619 Merge branch 'ux-release-1' of https://github.com/biosistemika/scinote-web into zd_SCI_2218_2219 2018-03-29 16:42:10 +02:00
zmagod
7c1390ece2 implement sidebar toggle [fixes SCI-2232] 2018-03-28 14:12:11 +02:00
Luka Murn
c07dc98cc8 Fix Office Online editing of files [SCI-2264] 
Office Online files could not be edited. I believe the reason
was that in Rails 5.1, `render nothing: true` was removed. So
I replaced this in `wopi_controller` with `render body: nil`.
Hopefully this will do the trick.

Closes SCI-2264.
 2018-03-28 13:22:30 +02:00
okriuchykhin
fc06f8c60b
Merge pull request #1055 from okriuchykhin/ok_SCI_2250 
Skip asset if file is missing in protocol export [SCI-2250]
 2018-03-26 14:19:49 +02:00
okriuchykhin
b1fcdb7474
Merge pull request #1057 from okriuchykhin/ok_SCI_2249 
Fix sample assign permissions [SCI-2249]
 2018-03-26 13:24:38 +02:00
Oleksii Kriuchykhin
e42fc3117b Implement search in file repository cells and improve performance [SCI-2111] 2018-03-26 13:19:09 +02:00
zmagod
8f09e1f7a4 Merge branch 'ux-release-1' of https://github.com/biosistemika/scinote-web into zd_SCI_2139_2121 2018-03-26 13:08:31 +02:00
zmagod
c61efb0624 rename before_acton hook 2018-03-26 13:07:00 +02:00
Oleksii Kriuchykhin
aa69624f9f Fix sample assign permissions [SCI-2249] 2018-03-25 20:10:32 +02:00
Oleksii Kriuchykhin
ecd3c73772 Skip asset if file is missing in protocol export [SCI-2250] 2018-03-25 13:36:24 +02:00
zmagod
baf69461f5 adds edit/create modal and related actions 2018-03-23 16:00:33 +01:00
mlorb
bc06542ed7 refactor project navigation 2018-03-22 11:41:33 +01:00
zmagod
3be3c00574 adds manage columns page [fixes SCI-2218] 2018-03-22 09:35:36 +01:00
zmagod
81df97f008 add library sidebar and create new library button [fixes SCI-2121] 2018-03-21 09:22:55 +01:00
zmagod
62858bc14f Merge branch 'ux-release-1' of https://github.com/biosistemika/scinote-web into zd_SCI_2139_2121 2018-03-20 14:46:11 +01:00
zmagod
1ad8c259d1 add blank page for repositories [fixes SCI-2139] 2018-03-20 14:45:57 +01:00
zmagod
c46da5cc67 fixes import protocol bug for guest user [fixes SCI-2197] 2018-03-19 16:10:28 +01:00
Oleksii Kriuchykhin
a105e61d48 Remove tutorial [SCI-1860] 2018-03-18 13:18:05 +01:00
zmagod
fad4001273 fix edit row action 2018-03-16 12:27:19 +01:00
zmagod
1cdba5e0d3 Merge branch 'samples_to_repositories_table_migration' of https://github.com/biosistemika/scinote-web into zd_SCI_2068 2018-03-16 11:05:16 +01:00
zmagod
c2eb6d6900 fixes hound adds specs to repository_list_items controller 2018-03-16 10:53:05 +01:00
zmagod
d69754af04 implement search on list items dropdown, update, create actions [fixes SCI-2070] 2018-03-15 15:43:16 +01:00
Zmago Devetak
f778415321
Merge pull request #1014 from ZmagoD/zd_SCI_2025 
Fix custom repositories export so it supports "list of values" custom column types [fixes SCI-2025]
 2018-03-13 15:20:46 +01:00
Zmago Devetak
d7679dcb99
Merge pull request #1032 from ZmagoD/zd_SCI_2141 
refactor global activities in separate page [fixes SCI-2141]
 2018-03-13 15:20:14 +01:00
okriuchykhin
503617b42c
Merge branch 'samples_to_repositories_table_migration' into zd_SCI_2025 2018-03-13 14:44:20 +01:00
zmagod
dd2f7dd417 Merge branch 'master' of https://github.com/biosistemika/scinote-web into samples_to_repositories_table_migration 2018-03-13 13:24:36 +01:00
Oleksii Kriuchykhin
269f7d74fa Add explicit ordering to samples_tables [SCI-2148][SCI-2149] 2018-03-13 13:16:34 +01:00
Oleksii Kriuchykhin
21c07371c9 Fix repository export to support file columns [SCI-2079] 2018-03-13 10:40:27 +01:00
zmagod
e218cae453 refactor global activities in separate page [fixes SCI-2141] 2018-03-12 11:01:23 +01:00
mlorb
64e26e1c60 add file custom column type to db 2018-03-09 17:04:54 +01:00
okriuchykhin
707d2a048f
Merge pull request #1024 from okriuchykhin/ok_SCI_2145 
Fix sample record creation [SCI-2145]
 2018-03-09 16:52:38 +01:00
okriuchykhin
7cbfa5936a
Merge pull request #1026 from okriuchykhin/ok_SCI_2148 
Add uniqueness validation for SamplesTable [SCI-2148][SCI-2149]
 2018-03-09 16:42:33 +01:00
Oleksii Kriuchykhin
853e1f7657 Fix nil case [SCI-2145] 2018-03-09 16:41:23 +01:00
Oleksii Kriuchykhin
e4d974aa58 Add uniqueness validation for SamplesTable [SCI-2148][SCI-2149] 2018-03-09 15:34:06 +01:00
zmagod
4f951f6679 adds unit specs for datatable service [fixes SCI-2068] 2018-03-09 14:22:00 +01:00
Oleksii Kriuchykhin
940469e41b Fix user management on project [SCI-2146] 2018-03-09 12:08:34 +01:00
Oleksii Kriuchykhin
804d313f90 Fix sample record creation [SCI-2145] 2018-03-09 11:52:28 +01:00
Oleksii Kriuchykhin
1765d83cd1 Refactor search to support repository list items [SCI-2108] 2018-03-09 11:05:43 +01:00
zmagod
26883af386 fix assigned ordering 2018-03-08 17:36:10 +01:00
Oleksii Kriuchykhin
1082f7f93c Fix notification for user removal from a team [SCI-2131] 2018-03-07 13:20:17 +01:00
zmagod
fb66131e29 setup endpoint for repository_rows paging/search 2018-03-06 16:32:39 +01:00
mz3944
bb21f6543c
Merge pull request #1004 from mz3944/mz-SCI-2011 
Wrapping up the permissions [SCI-2011]
 2018-03-06 07:10:40 +01:00
Matej Zrimšek
c5b0a6525b Some additional permission calls fixes, minor refactoring. 2018-03-06 06:56:35 +01:00
Zanz2
c5728c4018
Merge branch 'master' into null_step_crash_sci2043 2018-03-05 16:37:24 +01:00
zmagod
fca01bd54f refactor repository export [fixes SCI-2025] 2018-03-05 15:54:04 +01:00
mlorb
5e44859ce0
Merge pull request #1010 from mlorb/ml-sci-1826 
Sign up with linkedIn account [SCI-1826]
 2018-03-05 13:24:36 +01:00
mlorb
a19b672a83
change validation again 2018-03-05 13:12:44 +01:00
Matej Zrimšek
61d1f5374d Additionaly removed some unneeded code, related to the previous commit. 2018-03-04 15:24:43 +01:00
Matej Zrimšek
53f75f3cd6 Minor permissions and their calls refactoring and fixing. 2018-03-04 14:49:41 +01:00
mlorb
d19ca7fbdc
change validation 2018-03-02 16:32:46 +01:00
zmagod
4642d049fa fix hound 2018-03-02 14:16:31 +01:00
zmagod
2b55cd7090 rename variables 2018-03-02 14:14:27 +01:00
mlorb
f5949e9d10 refactor 2018-03-01 17:52:24 +01:00
mlorb
08439e7f58 sign up with linkedIn account 2018-02-28 18:12:21 +01:00
zmagod
29a1073a50 refactor queries 2018-02-27 16:34:51 +01:00
zmagod
e3ca782996 add info modal for repository items [fixes SCI-2066] 2018-02-27 16:21:46 +01:00
Matej Zrimšek
96a6779d55 Fixed misspelled permission call. 2018-02-22 14:08:12 +01:00
Matej Zrimšek
ff9dff5c10 Fixed reports permissions check calls. Fixed Hound warnings. 2018-02-22 13:51:22 +01:00
Zanz2
29aea1ebd2 refactored according to PR 2018-02-21 16:17:53 +01:00
Matej Zrimšek
b8b9707c06 Fixed protocol and archive permission calls, fixed result permissions; module group managing is now also allowed on newly created groups; other permission call fixes and some refactoring. 2018-02-19 14:51:14 +01:00
mlorb
d2dcb765b4 fix bug with load older activities button not working 2018-02-16 15:42:10 +01:00
Matej Zrimšek
7b07e7b347 Fixed protocol in repository permissions, and refactored it a bit. 2018-02-16 12:04:11 +01:00
Matej Zrimšek
6ba226d514 Added missing '?' to the canaid permission calls that were missing it. 2018-02-16 11:12:30 +01:00
Matej Zrimšek
5bda53eebf Overall refactoring of all canaid permissions and code related to their calls. 2018-02-16 10:54:06 +01:00
Matej Zrimšek
4fe669ca9a Removed permissions helper and updated the remaining calls to its methods with the new canaid gem permissions. 2018-02-16 10:53:22 +01:00
Zanz2
c963c948a1 Fixed main issue, bad step structure now gets fixed to empty template 2018-02-15 23:28:20 +01:00
Zanz2
95501eb046 saving work for later 2018-02-15 20:01:36 +01:00
mlorb
9797712561
Merge pull request #997 from mlorb/ml-sci-2045 
Fix bug with user getting the notification at completing the step, when notifications are switched off [SCI-2045]
 2018-02-15 14:51:40 +01:00
Matej Zrimšek
09c5e23adf Fixed permission checks for completing step and checking step checkboxes. Disabled turbolinks for comments since it can cause issues. Minor code styling changes. 2018-02-14 14:39:10 +01:00
Matej Zrimšek
d571ab2ed8 Fixed comments permissions for experiment level. 2018-02-14 14:39:10 +01:00
Matej Zrimšek
6b1fee4d30 Added/joined repository record assignment to task with sample assignmment to task. 2018-02-14 14:39:10 +01:00
Matej Zrimšek
4c87fb4a55 Fixed permission error when restoring task. 2018-02-14 14:39:09 +01:00
Matej Zrimšek
946f516171 Fixed permission error when moving a freshly cloned task. 2018-02-14 14:39:09 +01:00
Matej Zrimšek
d55734e501 Added additional permission checks for moving tasks. Added forgotten enclosing tag in a view. 2018-02-14 14:39:07 +01:00
Matej Zrimšek
d7108f5a35 Fixed Hound warnings. 2018-02-14 14:39:07 +01:00
Matej Zrimšek
8ef6c8f91f Refactored remaining experiment level permissions (and everything below it). 2018-02-14 14:39:07 +01:00
Matej Zrimšek
0706d16020 Readded module level archive, move, clone and manag permissions. Corrected their usage and add the permissions check in some additional places. 2018-02-14 14:19:22 +01:00
Matej Zrimšek
1182ce5da1 Fixed experiment level permission checks in the controllers. 2018-02-14 14:19:22 +01:00
Matej Zrimšek
7938c2e036 Minor code style changes. 2018-02-14 14:19:22 +01:00
Matej Zrimšek
c5b798017e Minor Hound warning fixes. 2018-02-14 14:19:22 +01:00
Matej Zrimšek
d6e7ef465c Grouped remaining permissions for experiment, protocol, task, and partially step levels. [SCI-1964] 2018-02-14 14:19:22 +01:00
Matej Zrimšek
854333b0e6 Grouped permissions for experiment with canaid gem (WIP). 2018-02-14 14:19:00 +01:00
Matej Zrimšek
d058c371d4 Readded project archive permission. 2018-02-14 13:16:32 +01:00
Matej Zrimšek
e36ec69ca9 Project level permissions refactoring (mostly names). 2018-02-14 13:16:32 +01:00
Matej Zrimšek
93536afcd5 Renamed permission 'update_project' to 'manage_project'. Some permissions fixes; added them in some places where they were missing. 2018-02-14 13:16:32 +01:00
Matej Zrimšek
13e9a2a132 Corrected some project level permissions; minor refactoring. 2018-02-14 13:16:32 +01:00
Matej Zrimšek
a21343a819 Fixing and refactoring project permissions in controllers. 2018-02-14 13:16:32 +01:00
Matej Zrimšek
279da20060 Fixed Hound warnings. 2018-02-14 13:16:32 +01:00
Matej Zrimšek
d423700e84 Used permissions where they were missing. 2018-02-14 13:16:32 +01:00
Matej Zrimšek
321ddc2916 Grouped existing project permissions and used 'canaid' gem. 2018-02-14 13:09:45 +01:00
mlorb
8d0ac93c80 add check to start work on next task notification if recent changes notification is switched off 2018-02-13 11:01:45 +01:00
Zmago Devetak
027297d46a
Merge pull request #985 from ZmagoD/zd_SCI_2008 
fixes bug with assets upload on task result page,
 2018-02-12 11:40:44 +01:00
okriuchykhin
e7fb1bc716
Merge pull request #967 from okriuchykhin/ok_SCI_1966 
Merge gilson-iot-rails4 to master [SCI-1966]
 2018-02-12 11:02:17 +01:00
Zmago Devetak
e400514020
Merge pull request #981 from ZmagoD/zd_SCI_2026 
fixes bug with step table update [fixes SCI-2026]
 2018-02-07 14:35:15 +01:00
Zanz2
ef0733b886
Merge pull request #988 from Zanz2/red_error_msg_sci1993 
Accidentally deleted this off master, identical to the branch before [SCI-1993]
 2018-02-07 13:08:45 +01:00
Zanz2
367eff6401 re-pushing this, this got merged into master already but i accidentally deleted it when merging two branches 2018-02-07 11:17:53 +01:00
mlorb
e151c963e1 fix error on task activity 2018-02-06 16:34:16 +01:00
zmagod
2ad4eb3488 fix bug with checklists 2018-02-06 16:15:10 +01:00
zmagod
75cc9d11df fix error on checklists 2018-02-06 16:06:15 +01:00
zmagod
bd1345d560 fixes bug with assets upload on task result page, 
adds ctrl+v listener to upload images from clipboard, adds image preview modal
 2018-02-06 15:39:19 +01:00
Zanz2
83e9550feb
Merge pull request #966 from Zanz2/images_not_imported_SCI1807 
Images not imported [SCI-1807]
 2018-02-06 14:33:35 +01:00
Zanz2
dac59cf4d0 Refactored to PR, deleted unrelated things 2018-02-06 09:06:33 +01:00
zmagod
b48fa3f231 fixes bug with step table update [fixes SCI-2026] 2018-02-05 17:32:38 +01:00
zmagod
25dcfe66ae Merge branch 'master' of https://github.com/biosistemika/scinote-web into zd_SCI_1960 2018-02-01 16:04:05 +01:00
Zanz2
e8f6dc0d24
Merge pull request #962 from Zanz2/missing_error_SCI1993 
A red error messagge is now displayed when not selecting protocol [SCI-1993]
 2018-01-26 16:00:15 +01:00
Oleksii Kriuchykhin
7c14800570 Change base class for API controller [SCI-1966] 2018-01-26 13:34:38 +01:00
Zanz2
e041426a09
Merge pull request #964 from Zanz2/steps_order_SCI1816 
Steps order fix [SCI-1816]
 2018-01-26 11:32:28 +01:00
okriuchykhin
94f604ae17
Merge pull request #961 from okriuchykhin/ok_SCI_1994 
Actually return 404 when requested asset doesn't exist [SCI-1994]
 2018-01-26 11:14:59 +01:00
Zanz2
4ee51959eb fixed hound 2018-01-26 09:56:59 +01:00
Zanz2
346f9feaef Refactored pull request, but also just did a quick fix on a bug where special characters in titles of steps (% & #) got escaped by sanitize helper, now the string gets sanitized first, then the special characters get unescaped by CGI. unescape html 2018-01-26 09:34:58 +01:00
Zanz2
24e772d7e5 Merge branch 'steps_order_SCI1816' of https://github.com/Zanz2/scinote-web into steps_order_SCI1816 2018-01-26 08:26:38 +01:00
Zanz2
fc541147c8 A red error messagge is now displayed when selecting no protocol and pressing upload on protocols io import, and after the modal is closed the messagge is gone 2018-01-25 15:54:38 +01:00
okriuchykhin
0b1f43c1c5
Merge pull request #954 from okriuchykhin/ok_SCI_1970 
Add health check endpoint to API controller [SCI-1970]
 2018-01-25 14:33:37 +01:00
Oleksii Kriuchykhin
7dd9121072 Actually return 404 when requested asset doesn't exist [SCI-1994] 2018-01-25 14:30:04 +01:00
mlorb
ab2955c9bb
Merge pull request #956 from mlorb/ml-sci-1491 
Add notification for previous task has been completed [SCI-1491]
 2018-01-25 11:35:19 +01:00
zmagod
9b836d04fa fixes per @mlorb 's request 2018-01-24 13:21:53 +01:00
Zanz2
7fe1c20ebe Finished the protocol reorder functions and implemented them 2018-01-24 09:31:43 +01:00
Mojca Lorber
ac8b1769be add notification for previous task has been completed 2018-01-23 15:53:33 +01:00
zmagod
f8a3fca2db Merge branch 'master' of https://github.com/biosistemika/scinote-web into decoupling 2018-01-23 11:06:33 +01:00
Oleksii Kriuchykhin
28be7c4fc4 Add health check endpoint to API controller [SCI-1970] 2018-01-22 16:52:48 +01:00
zmagod
ee7c646b1d update user settings controllers to new permission system [fixes SCI-1960] 2018-01-22 16:42:26 +01:00
Oleksii Kriuchykhin
91468faaf9 Fix addons display in info modal [SCI-1875] 2018-01-17 18:30:55 +01:00
zmagod
488dba378e fixes bug in the invitation_controller with full_name sanitization [fixes SCI-1944] 2018-01-17 15:06:43 +01:00
okriuchykhin
38aaaa011c
Merge pull request #936 from okriuchykhin/ok_SCI_1939 
Fix repository records import [SCI-1939]
 2018-01-17 12:55:11 +01:00
Oleksii Kriuchykhin
3c8d8e2fbb Fix samples import [SCI-1946] 2018-01-16 17:50:33 +01:00
Oleksii Kriuchykhin
a64012237e Fix repository records import [SCI-1939] 2018-01-15 18:01:35 +01:00
Zmago Devetak
ebd354e4d5
Merge pull request #900 from ZmagoD/zd_SCI_1854 
adds premissions service to FE
 2018-01-12 14:24:28 +01:00
Zanz2
b105920d4e
Merge pull request #901 from Zanz2/code_refactor 
Protocols.io code beautification and refactoring [SCI-1929]
 2018-01-12 12:34:00 +01:00
zmagod
371491c259 refactor 2018-01-12 11:38:52 +01:00
mlorb
aba426091c add render 403 for create team permission 2018-01-10 10:47:45 +01:00
mlorb
6c4514f550 add create_teams permission checks 2018-01-09 15:28:27 +01:00
zmagod
0d7c116de1 Merge branch 'decoupling-settings-page' of https://github.com/biosistemika/scinote-web into zd_SCI_1854 2018-01-09 10:03:02 +01:00
zmagod
c5379896c0 fix HOC to recive objects 2018-01-08 16:28:20 +01:00
Zmago Devetak
0e6931b1f3
Merge pull request #908 from ZmagoD/zd_SCI_1866 
Wrong date at activity
 2018-01-08 14:20:26 +01:00
zmagod
c07f54a0c7 Merge branch 'decoupling-settings-page' of https://github.com/biosistemika/scinote-web into zd_SCI_1854 2018-01-08 08:38:14 +01:00
zmagod
eb8124ea5a follow @duco 's suggestions 2018-01-05 17:08:00 +01:00
mlorb
e76ec7f4a4
Merge pull request #911 from mlorb/ml-sci-1797 
Permissions - refactor organization & team level permissions (core) [SCI-1797]
 2018-01-05 16:03:55 +01:00
mlorb
99185871c4 fix naming things 2018-01-05 15:15:50 +01:00
mlorb
70ae14a9b8 refactor manage repository permissions again because of addons 2018-01-05 11:17:01 +01:00
mlorb
ec851caa80 refactor manage repository column permissions again because of addons 2018-01-05 10:43:59 +01:00
zmagod
862b73cae7 Merge branch 'decoupling-settings-page' of https://github.com/biosistemika/scinote-web into zd_SCI_1866 2018-01-05 09:13:43 +01:00
okriuchykhin
b0f8c36677
Merge pull request #917 from okriuchykhin/ok_SCI_1870 
Fix adding users to a task [SCI-1870]
 2018-01-04 14:14:05 +01:00
mlorb
abced181d5 refactor manage repository rows permissions again because of addons 2018-01-04 11:53:58 +01:00
zmagod
e0e3ef9359 fixes flow, and before_action in permissions_controller 2018-01-03 17:23:50 +01:00
mlorb
0c519b8f03 refactor manage sample elements permissions again because of addons 2018-01-03 16:37:02 +01:00
zmagod
1d3881b649 fixes bug with duplicated activities and wrong date separators [fixes SCI-1866] 2018-01-03 13:48:59 +01:00
mlorb
dc68b3068b fix Rails 5.1 bug with params 2018-01-03 13:19:56 +01:00
mlorb
0774b6f7e6 refactor manage samples permissions again, so that addons permissions can be added 2017-12-20 16:05:05 +01:00
Oleksii Kriuchykhin
49ae9bcd55 Fix adding users to a task [SCI-1870] 2017-12-20 13:44:21 +01:00
Oleksii Kriuchykhin
512ee07bde Fix repositories [SCI-1873] 2017-12-19 17:53:45 +01:00
Luka Murn
cf291bf887 Merge branch 'gilson-iot-rails4' 
Conflicts:
	Gemfile.lock
 2017-12-19 10:56:39 +01:00
mlorb
bd7eda1506 fix failing tests 2017-12-14 14:18:18 +01:00
mlorb
2936770c01 refactor can view team users ATWHO permission 2017-12-14 14:18:18 +01:00
mlorb
5c790287ec refactor again manage user team permissions 2017-12-14 14:18:18 +01:00
mlorb
7c1ae6bc82 refactor manage repository permissions 2017-12-14 14:18:18 +01:00
mlorb
2918a9833d refactor manage repository column permissions 2017-12-14 14:18:18 +01:00
mlorb
3f5e9e60b7 refactor view repository permission 2017-12-14 14:18:18 +01:00
mlorb
079ac7a4d3 refactor manage repository row permissions 2017-12-14 14:18:18 +01:00
mlorb
740ecc674b refactor view repositories permission 2017-12-14 14:18:18 +01:00
mlorb
3ca51f097f refactor manage sample permissions again by removing authorship and refactor manage sample elements permissions 2017-12-14 14:18:17 +01:00
mlorb
e577b363b2 byTheWay fix of Rails 5.1 bug 2017-12-14 14:18:17 +01:00
mlorb
29f9414839 refactor create project permission 2017-12-14 14:18:17 +01:00
mlorb
72023c7dfe refactor update/delete sample permissions 2017-12-14 14:18:17 +01:00
mlorb
b09377cd8d refactor update sample permission 2017-12-14 14:18:17 +01:00
mlorb
f801ed8eb6 refactor view/export samples permission 2017-12-14 14:18:16 +01:00
mlorb
0d37f9c85a refactor clone protocol permission 2017-12-14 14:18:16 +01:00
mlorb
f6d36ae6a2 refactor update protocol type in repository 2017-12-14 14:18:16 +01:00
mlorb
806fcbce36 refactor update protocol in repository permission 2017-12-14 14:18:16 +01:00
mlorb
e0d1ae174e refactor read protocol in repository permission 2017-12-14 14:18:15 +01:00
mlorb
a3a494c3a2 fix banana: remove dead code which strangely reappeared, probably with some rebasing 2017-12-14 14:18:15 +01:00
mlorb
ccc2451494 refactor create sample permissions 2017-12-14 14:18:15 +01:00
mlorb
43c01b74b1 refactor create protocol permission 2017-12-14 14:18:14 +01:00
mlorb
11a3cd196c add create, update team permission and refactor 422 respond handling in controllers 2017-12-14 14:18:14 +01:00
mlorb
8893fd668d add create, update, delete user_team permission 2017-12-14 14:18:14 +01:00
mlorb
a0b2d3f5ef refactor read_team permission 2017-12-14 14:18:14 +01:00
zmagod
219ef3baf6 setup new pagination for activities 2017-12-14 14:02:40 +01:00
zmagod
249d3d7698 fixes current timezone setup for activities 2017-12-13 16:48:31 +01:00
okriuchykhin
2fa7591f36
Merge pull request #903 from okriuchykhin/ok_SCI_1864 
Rename notifications settings accessor [SCI-1864]
 2017-12-13 12:57:56 +01:00
Oleksii Kriuchykhin
baf3151bb0 Fix notification settings accessors [SCI-1864] 2017-12-13 11:59:53 +01:00
zmagod
b106545d31 fixes per @duco 's request 2017-12-13 08:57:50 +01:00
Zmago Devetak
00be4460cc
Merge pull request #806 from ZmagoD/disable_tiny_mce_asset_unless_step 
Fixes bug with embedded images [SCI-1624]
 2017-12-12 09:53:24 +01:00
Oleksii Kriuchykhin
6256acdfea Rename notifications settings accessor [SCI-1864] 2017-12-07 13:59:33 +01:00
Luka Murn
86ac07c69f
Merge pull request #902 from biosistemika/rails-5.1 
Merge rails-5.1 into decoupling-settings-page
 2017-12-07 09:25:11 +01:00
okriuchykhin
b3b0e367e8
Merge pull request #889 from okriuchykhin/ok_SCI_1747 
Improve server side assets validation display for steps [SCI-1747]
 2017-12-04 14:12:43 +01:00
zmagod
e01e7bebbf add permissions endpoint on the API 2017-12-04 13:25:48 +01:00
Zanz2
835ac6910f Code refactor part 1 2017-12-02 00:29:47 +01:00
zmagod
52b278fe78 adds premissions service to FE 2017-12-01 17:15:15 +01:00
okriuchykhin
16729ccd7d
Merge pull request #898 from okriuchykhin/ok_SCI_1838 
Fix assignment of users to projects [SCI-1838]
 2017-11-30 11:16:07 +01:00
Oleksii Kriuchykhin
194054d973 Fix assignment of users to projects [SCI-1838] 2017-11-29 22:55:10 +01:00
Oleksii Kriuchykhin
7bb52191cd Fix Ajax calls with redirect [SCI-1837] 2017-11-29 16:13:28 +01:00
Zanz2
bb8aef3b73
Merge pull request #893 from Zanz2/step_desc_2small_SCI-1833 
Fixed validations lengths and added workarounds for bugs [SCI-1833]
 2017-11-24 17:55:20 +01:00
zmagod
066c782cd2 Merge branch 'master' of https://github.com/biosistemika/scinote-web into disable_tiny_mce_asset_unless_step 2017-11-24 16:29:32 +01:00
Zmago Devetak
027f4a5921
Merge pull request #890 from ZmagoD/zd_SCI_1651 
export and import RTE images
 2017-11-24 16:28:28 +01:00
Zanz2
dc5904aed9 Fixed this jira issue and added workarounds for bugs 2017-11-24 01:45:40 +01:00
Zanz2
f577bf93b5 Fixed pull request review 2017-11-21 19:20:15 +01:00
zmagod
91fec89cab adds tiny_mce_assets to protocol export 2017-11-21 16:30:48 +01:00
Oleksii Kriuchykhin
fe8b7d26c1 Improve server side assets validation display for steps [SCI-1747] 2017-11-21 13:48:06 +01:00
Zanz2
d8c809ffd0 Reviewed pull request 2017-11-20 23:19:34 +01:00
Zanz2
cf66d94d45 Reworked functions into one function, defined all protocols.io attributes as dynamic constants, applied length checking to all protocols.io attribute fields 2017-11-20 00:59:32 +01:00
Zanz2
fa25a6785b Made the propper files and functionality for the text truncation to function 2017-11-17 02:43:32 +01:00
Zanz2
b2e1623cf1 Merge branch 'master' of https://github.com/biosistemika/scinote-web into validations_cutoff_SCI-1784 2017-11-16 20:04:12 +01:00
Zanz2
c44465817d Added the functions and put in limitations from my validations files, changed controller name, added some locals 2017-11-16 20:03:44 +01:00
Zanz2
1b540a75a1 Fixed to use .megabytes 2017-11-16 15:17:13 +01:00
Zanz2
41c1193a78 Fixed unit error;Now when comparing file size, both are in bytes 2017-11-16 01:34:38 +01:00
Oleksii Kriuchykhin
84f4aba213 Pull latest master into gilson-iot-rails4 2017-11-15 15:15:26 +01:00
mlorb
288e3ddcbd
Merge pull request #877 from mlorb/ml-sci-1190 
Fix bug when removing all keywords in protocol [SCI-1190]
 2017-11-15 11:22:18 +01:00
Mojca Lorber
c2a5b52767 fix bug when removing all keywords in protocol 2017-11-14 15:04:37 +01:00
Zanz2
6b9a10ffe4 Made validations for JSON format and .txt and .json files 2017-11-14 12:02:17 +01:00
Zanz2
f35ab78849 Added some code to make the two seperate jira issues work together (protocol info and scinote tables 2017-11-14 00:56:39 +01:00
mlorb
cd6799d571
Merge pull request #866 from biosistemika/protocols-io-import 
Protocols io import
 2017-11-13 11:53:28 +01:00
Zanz2
b265beb386
Merge pull request #864 from Zanz2/move_desc 
Move protocol.io protocol description to step 1 of protocols [SCI-1695]
 2017-11-13 10:07:01 +01:00
Zanz2
23d3ffa5a4 Fixed PR 2017-11-12 15:48:45 +01:00
Zanz2
e7384ac38d Code review fixes, made seperate helper file 2017-11-12 15:31:04 +01:00
Zanz2
fa2c0fe556 merging 2017-11-09 18:55:17 +01:00
Zanz2
812fa3f1d5 Hopefully this will resolve my merge problems 2017-11-09 17:42:17 +01:00
zmagod
9eac014f1a Merge branch 'decoupling-settings-page' of https://github.com/biosistemika/scinote-web into zd_SCI_1731 2017-11-09 09:05:22 +01:00
zmagod
e2af987b80 Merge branch 'decoupling-settings-page' of https://github.com/biosistemika/scinote-web into zd_SCI_1568 2017-11-09 08:35:39 +01:00
zmagod
54e360bb52 fixes team switch 2017-11-06 15:14:17 +01:00
mlorb
126f278308
Merge pull request #853 from Zanz2/ZZ_import_protocolsio_json 
Scinote protocols IO base branch
 2017-11-06 14:53:01 +01:00
Zanz2
aa03a889c7 Fixed PR review 2017-11-03 16:28:15 +01:00
zmagod
5bc38414d1 Merge branch 'decoupling-settings-page' of https://github.com/biosistemika/scinote-web into zd_SCI_1731 2017-11-03 09:56:44 +01:00
zmagod
2118b31762 adds about sciNote modal 2017-11-02 13:23:57 +01:00
Zanz2
de9a3a1d0d Preview tables are now functional but with inline javascript , ugly styling and a few major bugs (they dont display fully until you click on them, and i dug deep on the handson table wiki and hot table wiki for issues like this, and while they exist, idk how to implement the solutions because they use angular js mostly 2017-10-28 23:57:29 +02:00
Zanz2
2413dc251a Added new preview tables code 2017-10-28 02:19:22 +02:00
okriuchykhin
2e0bf91467 Merge pull request #831 from biosistemika/revert-830-revert-820-lm-sci-1675 
Add Add-ons page to User -> Settings -> Account [SCI-1675], vol. 2
 2017-10-27 11:14:39 +02:00
Zanz2
a732c8afa7 Code for protocol repository scinote table elements view 2017-10-26 17:28:27 +02:00
zmagod
3d22a5404d add scenic gem, teams datatables sql view 2017-10-26 16:59:00 +02:00
zmagod
d2ed415a25 Fixes per @okriuchykhin 's request 2017-10-26 10:42:18 +02:00
Zanz2
79e0a11054 Fixed before start and link not displaying in protocol description 2017-10-25 17:39:01 +02:00
zmagod
5e6a4bb69a adds environment variable that disables/enables the creation of new team when user sign up 2017-10-25 15:29:04 +02:00
zmagod
c36fcb1fa4 fixes user invitation button [fixes SCI-1726] 2017-10-25 11:31:32 +02:00
Zanz2
19b9da2e83 deleted comment 2017-10-24 19:44:34 +02:00
Zanz2
49501b3d3d Finished review refactor 2017-10-24 19:24:53 +02:00
Luka Murn
c026b60790 Update Profile page to use validation 2017-10-23 18:04:20 +02:00
Luka Murn
82f982e983 Merge branch 'rails-5.1' into decoupling-settings-page 
Conflicts:
	Gemfile
	Gemfile.lock
 2017-10-23 10:59:10 +02:00
Luka Murn
8254153bb9 Merge branch 'master' into rails-5.1 
Conflicts:
	Gemfile
	Gemfile.lock
	app/models/connection.rb
	app/models/experiment.rb
	app/models/my_module.rb
 2017-10-23 08:57:57 +02:00
okriuchykhin
44733fefda Merge pull request #839 from okriuchykhin/ok_SCI_1609 
Improve error handling in file uploads [SCI-1609][SCI-1612][SCI-1551]
 2017-10-19 16:26:36 +02:00
Oleksii Kriuchykhin
631b41cdaa Improve error handling in file uploads [SCI-1609][SCI-1612][SCI-1551] 2017-10-19 11:38:23 +02:00
Zanz2
67b09adaeb Fixed last few rubocop errors 2017-10-17 19:43:46 +02:00
Zanz2
6cf775a4b1 Refactored code, made html render on preview too 2017-10-17 19:27:20 +02:00
okriuchykhin
8e90e041b9 Merge pull request #825 from okriuchykhin/ok_SCI_1665 
Optimize memory usage in samples/repositories import [SCI-1665]
 2017-10-17 17:26:00 +02:00
zmagod
c554bc5c18 fixes accept invitation bug [fixes SCI-1684] 2017-10-17 16:00:26 +02:00
Oleksii Kriuchykhin
cd0aba1896 Change any? to empty? [SCI-1665] 2017-10-17 15:23:54 +02:00
Oleksii Kriuchykhin
c8d2ae70fa Move duplicated code to service [SCI-1665] 2017-10-17 14:46:16 +02:00
Luka Murn
4e06b5c397 Revert "Revert "Add Add-ons page to User -> Settings -> Account [SCI-1675]"" 2017-10-17 13:17:49 +02:00
Luka Murn
4d8f2665d3 Revert "Add Add-ons page to User -> Settings -> Account [SCI-1675]" 2017-10-17 13:10:02 +02:00
Luka Murn
2fb2b90da3 Merge pull request #820 from Ducz0r/lm-sci-1675 
Add Add-ons page to User -> Settings -> Account [SCI-1675]
 2017-10-16 13:05:43 +02:00
Zanz2
e72c1bebcb deleted comments 2017-10-12 19:18:22 +02:00
Zanz2
8d0d6f0502 refactored methods 2017-10-12 19:10:16 +02:00
okriuchykhin
db9a031581 Merge pull request #813 from okriuchykhin/ok_SCI_1642 
Refactor canvas [SCI-1642]
 2017-10-12 17:45:34 +02:00
Zanz2
21036a1081 Deleted unnecesarry if's 2017-10-12 17:22:02 +02:00
Zanz2
414a15872c Made seperate method for steps mapping 2017-10-12 17:15:43 +02:00
gazvoda
88f03a0706 Merge pull request #735 from gazvoda/lg-SCI-1249-v2 
Truncate checklist items in activity modal [fixes SCI-1249]
 2017-10-12 15:58:05 +02:00
Oleksii Kriuchykhin
56f52ebfa7 Optimize memory usage in samples/repositories import [SCI-1665] 2017-10-12 14:43:25 +02:00
Zanz2
5d667f146e Moved .js form reset and made a standalone description method 2017-10-11 17:59:09 +02:00
Luka Murn
fe89b942e7 Add Add-ons page to User -> Settings -> Account 
Closes SCI-1675.
 2017-10-11 14:15:37 +02:00
Oleksii Kriuchykhin
f8334b3d5b Add editable field to task in tasks tree API call [GIOT-44] 2017-10-09 14:38:33 +02:00
zmagod
d85233cb2c Merge branch 'decoupling-settings-page' of https://github.com/biosistemika/scinote-web into zd_SCI_1566 2017-10-09 09:30:06 +02:00
zmagod
2a64d23a6e Merge branch 'decoupling-settings-page' of https://github.com/biosistemika/scinote-web into zd_SCI_1567 2017-10-09 09:14:58 +02:00
Zanz2
8720222ac2 Added sanitising for all input, this escapes javascript too as far as i know (sanitize_input function from sanitize helper) 2017-10-07 22:45:01 +02:00
Zanz2
183c93d21b Refactoring to git review specifications 2017-10-07 22:13:31 +02:00
Zanz2
9655c98566 Github review refactor 2017-10-07 20:47:05 +02:00
Zanz2
f5b2ad0d34 Refactor github code review 2017-10-07 16:07:04 +02:00
Zanz2
66e5004e60 Changed import text to be inside en.yml, as said in the code review, deleted some blank lines 2017-10-07 15:56:43 +02:00
Oleksii Kriuchykhin
6820511ea0 Further canvas optimizations [SCI-1642] 2017-10-06 12:43:27 +02:00
zmagod
5a31df7204 adds @Ducz0r suggestions 2017-10-06 10:45:22 +02:00
zmagod
dea69014d0 fixes bug with password confirmation 2017-10-06 09:54:17 +02:00
Oleksii Kriuchykhin
b26b963e54 Optimize update canvas SQL and remove module group name [SCI-1642] 2017-10-05 16:19:25 +02:00
zmagod
a020e23286 follow suggestions of @Ducz0r 2017-10-05 13:56:56 +02:00
zmagod
754627efe7 Merge branch 'decoupling-settings-page' of https://github.com/biosistemika/scinote-web into zd_SCI_1564 2017-10-05 11:08:31 +02:00
zmagod
524e8bffbf fixes sign out action on settings page, clean the redux store, handles redirect to sign in page if session is terminated [fixes SCI-1567] 2017-10-05 10:07:50 +02:00
zmagod
3dc3ed906f fixes bug with embedded images [fixes SCI.1624] 2017-10-02 18:06:42 +02:00
zmagod
edf4443995 added notification alert [fixes SCI-1566] 2017-10-02 14:51:54 +02:00
Oleksii Kriuchykhin
6824f9a8bc Improve memory utulization in PDF report generator [SCI-1482] 2017-10-02 11:29:22 +02:00
zmagod
cb4bacc372 refactor preferences page [fixes SCI-1564] 2017-09-28 16:53:51 +02:00
zmagod
c8c8afdd1d update react-bootstrap 2017-09-28 15:00:54 +02:00
mlorb
c358f8fa0c write unit tests for invite users 2017-09-28 14:49:33 +02:00
zmagod
26b526d61b adds getter and setters for user settings 2017-09-27 14:38:52 +02:00
zmagod
66269d68ff fixed image upload 2017-09-27 09:17:09 +02:00
zmagod
e2aa0d7515 fixes user profile 2017-09-26 17:29:11 +02:00
Zanz2
b23ca33e73 Deleted todo-list comments :D 2017-09-26 16:46:17 +02:00
Zanz2
c72cf6320a Finished rubocop refactoring 2017-09-26 16:19:09 +02:00
Zanz2
8d961c934a Rubocop refactored part of the controller code 2017-09-26 13:17:00 +02:00
Zanz2
2bfe8f0b95 Testing why rubocop gives errors 2017-09-25 15:27:24 +02:00
Zanz2
292c1e3c31 Fixed bug, seems like unconssistent indexes instead of hash values can also happen in steps that arent first 2017-09-25 14:14:27 +02:00
Zanz2
11b2ef3112 Made code nicer, hopefully not unintentionally breaking something 2017-09-25 13:53:32 +02:00
zmagod
1a7f8fc857 added frontend validations 2017-09-22 16:59:38 +02:00
Zanz2
dd4d4072e8 Made code more aesthetic 2017-09-22 16:02:56 +02:00
Zanz2
6ebdea5dce Fixed old workaround with inconsistent protocols.io json formatting and made the workaround nicer (now its only one if statement, instead of one whole block of duplicated code) 2017-09-22 15:12:29 +02:00
Zanz2
4051c0b06b Deleted old unused files i spotted on github 2017-09-22 13:28:38 +02:00
Zanz2
deef790951 added validations to controllers (file too big, names too big), some javascript error messagges, and fixed some nil exceptions in controllers appending nil strings to descriptions 2017-09-22 11:56:50 +02:00
mlorb
9d96bf668a fix error handeling, refactoring 2017-09-21 16:42:56 +02:00
Zanz2
1dbb03e22d Added all the fields into description of protocol steps and protocol itself, need to make protocols description format nicer 2017-09-21 16:05:33 +02:00
zmagod
39025769ec Merge branch 'decoupling-settings-page' of https://github.com/biosistemika/scinote-web into zd_SCI_1564 2017-09-21 13:45:27 +02:00
zmagod
ed2beefc08 fixed profile info inputs 2017-09-21 13:42:49 +02:00
mlorb
55772a80ab fix hound and refactor 2017-09-21 10:45:36 +02:00
mlorb
48c8922604 adds invite users modal 2017-09-21 10:45:35 +02:00
Zanz2
f48833c47a added format .js response which hides the preview modal and refreshes the page with protocolsDatatable.ajax.reload(); 2017-09-21 08:40:05 +02:00
Luka Murn
e078ae4f77 Merge branch 'rails-5.1' into decoupling-settings-page 2017-09-21 08:36:09 +02:00
Luka Murn
5429f6bbbd Fix @ZmagoD's remarks 2017-09-21 08:06:11 +02:00
Zanz2
d59234a1e3 minor changes, working on refresh after submit 2017-09-20 16:04:52 +02:00
Zanz2
72c707ae88 protocol importing into database works, still need to decide how to add other fields from protocols.io to step description and protocol description, but that can be added easily, and need to make it refresh after submit 2017-09-20 15:31:10 +02:00
Luka Murn
416ccf905d Minor fix 2017-09-20 10:53:38 +02:00
Zanz2
7b85d74a23 added jquery code to reset file selector selected file after it is canceled in the preview modal 2017-09-20 09:32:31 +02:00
Zanz2
3812b2e64b Removed on modal hide refresh, no longer needed, works without data gets updated without refresh since its not passed by javascript locals anymore 2017-09-20 08:58:00 +02:00
Zanz2
ea8f3e822d Removed all the html bug workarounds since it is now fixed (strip tags and remove " now gone 2017-09-20 08:38:34 +02:00
Luka Murn
44877a13a5 Refactor services on backend. New team page is now working 2017-09-19 16:32:21 +02:00
Luka Murn
80c05e50ec Semi-working version of create new team form 2017-09-19 16:30:26 +02:00
Zanz2
7aba782639 optimised code so i dont need javascript locals anymore and working to fix infamous html tags bug where second modal doesnt show 2017-09-19 15:02:16 +02:00
zmagod
d1477179b2 Merge branch 'decoupling-settings-page' of https://github.com/biosistemika/scinote-web into zd_SCI_1499 2017-09-18 15:10:52 +02:00
Zanz2
f861b1fc52 Configured the controller,the main task ahead is to figure out how to import all of the data i have available 2017-09-15 15:52:55 +02:00
zmagod
83647d81b4 adds edit team name modal 2017-09-15 14:00:48 +02:00
Zanz2
5d6cc341ed added first half of inputs, working on scroller next, page now refreshes after you cancel out of import window, to update the data, will look for alternate way after im done 2017-09-14 14:42:04 +02:00
Toni Dezman
d38f4343f2 Decupling redux part 1 2017-09-14 11:46:49 +02:00
Zanz2
29b9d50363 Modals now popup correctly trough ajax, added js file for this functionality, and two partials which are reused from existing importer 2017-09-14 11:30:53 +02:00
zmagod
705d07f60e adds remove team action 2017-09-13 17:11:51 +02:00
Zanz2
9fc91aac32 added protocols io upload preview modal 2017-09-13 16:04:16 +02:00
Zanz2
b7432b336a added file upload popup modal, rails routes and controller functions, deleted old standalone model and controller 2017-09-13 15:15:08 +02:00
zmagod
1b3b3dfea9 adds team members update role functionality 2017-09-12 17:30:13 +02:00
Žan Žagar
706031dacb added model and controler, model should go to services while the controller should go to protocols controller 2017-09-12 15:25:22 +02:00
Toni Dezman
67d617deb5 adds hound_bot's and zmagos suggestions 2017-09-07 13:40:53 +02:00
Toni Dezman
185039bc99 adds suggestions from code review 2017-09-04 15:00:26 +02:00
zmagod
9c01ab414c refactor leave team 2017-09-01 17:10:43 +02:00
Oleksii Kriuchykhin
a927c2832d Improve error logging [GIOT-31] 2017-09-01 16:36:45 +02:00
zmagod
91d2d8a935 adds team details view 2017-08-31 15:56:55 +02:00
Toni Dezman
4034400c42 Merge branch 'decoupling-settings-page' into td_SCI_1565 2017-08-31 11:42:15 +02:00
Toni Dezman
8b61fe563c user preferences APIs 2017-08-31 11:23:44 +02:00
zmagod
1325732b0c adds specs for team controller actions 2017-08-30 16:18:21 +02:00
Toni Dezman
2e6a942152 api for timezone 2017-08-30 14:59:17 +02:00
Oleksii Kriuchykhin
c3fceb90df Backport API to Rails-4 [SCI-1579] 2017-08-30 13:30:41 +02:00
zmagod
ee054f91b8 adds bullet gem [fixes SCI-1578] 2017-08-30 09:29:45 +02:00
Toni Dezman
c82dfa502a adds errors in client_api for users_controller 2017-08-29 13:14:52 +02:00
zmagod
ec86691659 fixed tests 2017-08-29 12:04:00 +02:00
zmagod
c54dd9473e adds controller spec for leave team [fixes SCI-1497] 2017-08-29 11:56:46 +02:00
zmagod
478bd491ff added pagination and sorting to team tables 2017-08-28 17:05:09 +02:00
zmagod
5ea464b675 Merge branch 'decoupling-settings-page' of https://github.com/biosistemika/scinote-web into zd_SCI_1497 2017-08-28 09:36:29 +02:00
Toni Dezman
ea9a195f09 email and password action/redusers work 2017-08-26 14:07:31 +02:00
zmagod
db16da7bd6 adds custom query to fetch teams data 2017-08-25 16:07:37 +02:00
Toni Dezman
ccd14f6b50 adds apis for full_name and initials input fields 2017-08-25 14:45:02 +02:00
Toni Dezman
989be6563f Merge branch 'decoupling-settings-page' into td_SCI_1565 2017-08-25 09:06:38 +02:00
zmagod
782daabce1 first run 2017-08-25 08:54:32 +02:00
Toni Dezman
e4a704d063 namespaces client_api/users/user_controller.rb 2017-08-25 08:21:52 +02:00
zmagod
685cb42aac fixes repository, protocols link, adds csfr token to request headers 2017-08-21 15:30:54 +02:00
zmagod
c5e32c4ea0 Merge branch 'rails-5.1' of https://github.com/biosistemika/scinote-web into merge-rails-5.1-branch 2017-08-21 09:52:14 +02:00
Luka Murn
9227ea5854 Finish the user settings jsonb, also fix references throughout app 
Closes SCI-1475.
 2017-08-10 14:29:01 +02:00
Luka Murn
c62002381b Add default settings migration and concern 2017-08-10 11:30:57 +02:00
zmagod
bd352869a3 adds user account dropdown 2017-08-09 09:08:13 +02:00
zmagod
226458a3f0 adds recent notifications 2017-08-08 15:44:28 +02:00
zmagod
be42cd2204 refactor 2017-08-07 13:51:22 +02:00
Luka Murn
13eae287bb Revert "Add core API using JWT authentication and tests for it [SCI-1507]" 2017-08-07 11:54:45 +02:00
Luka Murn
c6448264d0 Revert "Td sci 1492" 2017-08-07 11:47:21 +02:00
Luka Murn
ae5bccf709 Merge branch 'master' into rails-5.1 
Conflicts:
	Gemfile.lock
	app/datatables/repository_datatable.rb
	app/models/repository_cell.rb
 2017-08-07 08:45:53 +02:00
Oleksii Kriuchykhin
35b643f34e Fix typo in config and code style improvements [SCI-1507] 2017-08-04 10:19:56 +02:00
Oleksii Kriuchykhin
e958410261 Add core API using JWT authentication and tests for it [SCI-1507] 2017-08-03 17:00:14 +02:00
zmagod
c314bae28d add team switch js/controller 2017-08-03 16:03:15 +02:00
zmagod
2e83322f76 fixes global activities 2017-08-03 11:17:09 +02:00
zmagod
6ef19725f1 adds redux 2017-08-02 17:27:05 +02:00
lenart
e781dfc6a6 Truncate activity taking smart annotations into account fixes [SCI-1249] 2017-08-02 15:51:32 +02:00
zmagod
caae1e2fe8 adds intl, router, bootstrap to npm modules 2017-07-31 10:42:40 +02:00
Toni Dezman
f76512f364 adds hound recomendations for react/settings_controller.rb 2017-07-28 12:53:15 +02:00
Toni Dezman
1673d43993 adds react/settings controller and react/layout 2017-07-27 15:26:03 +02:00
Oleksii Kriuchykhin
6a43483a2f Fix adding and editing repository items [SCI-1519] 2017-07-26 11:22:26 +02:00
Matej Zrimšek
ad0dce921b Fixed error when adding a value to a blank custom repository custum column cell. [SCI-1516] 2017-07-24 18:12:41 +02:00
Oleksii Kriuchykhin
ece27b2652 Fix importing files with empty header cells and error messages improvements [SCI-1484] 2017-07-18 14:54:35 +02:00
Oleksii Kriuchykhin
036ee390ed Fix error messages in repository import and uploading files starting with hyphen[SCI-1484] 2017-07-14 16:19:03 +02:00
Mojca Lorber
739f8b5b4e remove redundant rollback call 2017-07-13 13:49:26 +02:00
Nbernot
2a3e830a3c Merge pull request #732 from biosistemika/business_users 
Business users [SCI-1428, SCI-1447]
 2017-07-11 13:34:56 +02:00
Luka Murn
16e672b9d8 Add VERSION file where the sciNote Core version is stored 2017-07-10 09:26:35 +02:00
lenart
58e2575c75 Truncate checklist items in activity modal [fixes SCI-1249] 2017-07-07 15:56:16 +02:00
Luka Murn
9f60ece25f Merge branch 'master' into rails-5.1 
Conflicts:
	app/models/repository.rb
	app/models/repository_row.rb
	app/views/projects/index.html.erb
	app/views/shared/_secondary_navigation.html.erb
 2017-07-06 15:12:15 +02:00
Nejc Bernot
d917cf3340 Renames the WOPI_BREADCRUMBS_HOST env variable to WOPI_USER_HOST 2017-07-05 11:52:36 +02:00
Nejc Bernot
803934e07d Changes the host for the download and redirect paths 2017-07-05 10:23:10 +02:00
okriuchykhin
75c887ce7d Merge pull request #721 from okriuchykhin/ok_SCI_1412 
Fix activities [SCI-1412]
 2017-07-04 10:59:08 +02:00
zmagod
bc33883c3c first run fixing addons 2017-06-30 10:23:28 +02:00
Oleksii Kriuchykhin
e474cda03a Fix activities [SCI-1412] 2017-06-28 16:49:50 +02:00
Oleksii Kriuchykhin
21cce4baa0 Fix global search [SCI-1411] 2017-06-28 15:44:18 +02:00
okriuchykhin
d126391940 Merge pull request #710 from okriuchykhin/ok_SCI_1356 
Add global search in custom repositories [SCI-1356]
 2017-06-27 13:41:53 +02:00
Oleksii Kriuchykhin
4060ba2ac3 Code style fixes [SCI-1356] 2017-06-27 13:23:51 +02:00
Matej Zrimšek
f847b44067 Error is displayed and import is prevented in case repository name column is not mapped, when importing repository items from file. [SCI-1402] 2017-06-26 16:50:40 +02:00
Oleksii Kriuchykhin
e038bc58fa Add global search in custom repositories [SCI-1356] 2017-06-23 16:12:56 +02:00
zmagod
819f47b450 setup sciNote for Rails 5.1 2017-06-23 15:19:08 +02:00
zmagod
7367435c6d refactor 2017-06-22 17:32:12 +02:00
zmagod
2dd9b6ff19 fix update repository_row 2017-06-22 17:29:17 +02:00
zmagod
590135b9b3 refactor 2017-06-22 17:26:11 +02:00
zmagod
e7328c2e20 fixes row dupplication [fixes SCI-1385] 2017-06-22 16:01:37 +02:00
zmagod
28129ebb73 refactor 2017-06-21 17:39:20 +02:00
zmagod
bad52ceff1 Merge branch 'master' of https://github.com/biosistemika/scinote-web into zd_SCI_1336 2017-06-21 15:56:07 +02:00
zmagod
18fd5b00ba fix hound 2017-06-21 15:01:55 +02:00
zmagod
f66fb49b56 adds import records to repositories [fixes SCI-1336] 2017-06-21 14:45:50 +02:00
Matej Zrimšek
d907819de5 Removed byebug calls. [SCI-1383] 2017-06-21 10:49:00 +02:00
zmagod
f64e1ac713 fix locales 2017-06-21 09:31:39 +02:00
Matej Zrimšek
47407ef40c Removed empty first column of repository export file. [SCI-1383] 2017-06-20 18:40:41 +02:00
mlorb
7cbc8a2f95 Merge pull request #694 from mlorb/ml_sci_1347 
Fix flash when deleting samples of other users [SCI-1347]
 2017-06-19 14:19:57 +02:00
mlorb
beaba6a92b Merge pull request #693 from mlorb/ml_sci_1351_v3 
Fix error msg when editing empty cell in repositories [SCI-1351]
 2017-06-19 14:19:27 +02:00
zmagod
70fa681519 split the import service 2017-06-19 14:05:37 +02:00
Mojca Lorber
9b941fe374 fix flash when deleting samples of other users 2017-06-16 17:12:04 +02:00
Mojca Lorber
1b683bc70e fix error msg when editing empty cell in repositories 2017-06-16 15:09:04 +02:00
Mojca Lorber
ea455d3596 fix no repository name in activity bug 2017-06-15 09:43:10 +02:00
Mojca Lorber
e6ec184dba fix multiple errors handling on fields in repositories tables 2017-06-14 13:09:23 +02:00
zmagod
2d3b5f4308 refactor 2017-06-14 10:55:24 +02:00
zmagod
cee052fc19 added service object 2017-06-14 09:11:20 +02:00
Matej Zrimšek
cea6d15d3e Fixed Hound warning. [SCI-1351] 2017-06-13 18:15:47 +02:00
Matej Zrimšek
1bc46fe0cb Reverted the part of the repository row controller code that didn't needed changes. [SCI-1351] 2017-06-13 18:12:42 +02:00
Mojca Lorber
849b269d87 fix errors in repo table 2017-06-13 16:56:34 +02:00
mlorb
074a47aae1 Merge pull request #675 from mlorb/ml_sci_1272 
Fix permissions [SCI-1272]
 2017-06-13 10:51:04 +02:00
zmagod
a865253a2e first run 2017-06-13 08:10:10 +02:00